data_6VV7 # _model_server_result.job_id bnyj5IlNaRmCp67mcDtnqQ _model_server_result.datetime_utc '2024-11-23 13:06:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":204}' # _entry.id 6VV7 # _exptl.entry_id 6VV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VV7 _cell.length_a 61.505 _cell.length_b 72.018 _cell.length_c 72.044 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M,O 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 D CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 D CO CO . A CO 202 1_555 N O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc3 D CO CO . A CO 202 1_555 N O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc4 D CO CO . A CO 202 1_555 N O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc5 D CO CO . A CO 202 1_555 B NE2 HIS 159 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 D CO CO . A CO 202 1_555 O O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc7 B NE2 HIS 40 B HIS 38 1_555 J CO CO . B CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc8 J CO CO . B CO 202 1_555 O O HOH . B HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 342 n n P O2 PO4 sing 343 n n P O3 PO4 sing 344 n n P O4 PO4 sing 345 n n # _atom_sites.entry_id 6VV7 _atom_sites.fract_transf_matrix[1][1] 0.016259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 201 1 NDP NDP . D 3 CO A 1 202 1 CO CO . E 4 RPM A 1 203 1 RPM LIG . F 5 PO4 A 1 204 1 PO4 PO4 . G 5 PO4 A 1 205 2 PO4 PO4 . H 5 PO4 A 1 206 5 PO4 PO4 . I 2 NDP B 1 201 2 NDP NDP . J 3 CO B 1 202 2 CO CO . K 4 RPM B 1 203 2 RPM LIG . L 5 PO4 B 1 204 4 PO4 PO4 . M 6 SO4 B 1 205 1 SO4 SO4 . N 7 HOH A 1 301 137 HOH HOH . N 7 HOH A 2 302 132 HOH HOH . N 7 HOH A 3 303 58 HOH HOH . N 7 HOH A 4 304 142 HOH HOH . N 7 HOH A 5 305 11 HOH HOH . N 7 HOH A 6 306 135 HOH HOH . N 7 HOH A 7 307 76 HOH HOH . N 7 HOH A 8 308 85 HOH HOH . N 7 HOH A 9 309 35 HOH HOH . N 7 HOH A 10 310 18 HOH HOH . N 7 HOH A 11 311 8 HOH HOH . N 7 HOH A 12 312 91 HOH HOH . N 7 HOH A 13 313 138 HOH HOH . N 7 HOH A 14 314 51 HOH HOH . N 7 HOH A 15 315 101 HOH HOH . N 7 HOH A 16 316 73 HOH HOH . N 7 HOH A 17 317 125 HOH HOH . N 7 HOH A 18 318 106 HOH HOH . N 7 HOH A 19 319 3 HOH HOH . N 7 HOH A 20 320 97 HOH HOH . N 7 HOH A 21 321 10 HOH HOH . N 7 HOH A 22 322 110 HOH HOH . N 7 HOH A 23 323 112 HOH HOH . N 7 HOH A 24 324 55 HOH HOH . N 7 HOH A 25 325 13 HOH HOH . N 7 HOH A 26 326 4 HOH HOH . N 7 HOH A 27 327 70 HOH HOH . N 7 HOH A 28 328 74 HOH HOH . N 7 HOH A 29 329 1 HOH HOH . N 7 HOH A 30 330 86 HOH HOH . N 7 HOH A 31 331 141 HOH HOH . N 7 HOH A 32 332 31 HOH HOH . N 7 HOH A 33 333 22 HOH HOH . N 7 HOH A 34 334 102 HOH HOH . N 7 HOH A 35 335 64 HOH HOH . N 7 HOH A 36 336 130 HOH HOH . N 7 HOH A 37 337 131 HOH HOH . N 7 HOH A 38 338 123 HOH HOH . N 7 HOH A 39 339 139 HOH HOH . N 7 HOH A 40 340 140 HOH HOH . N 7 HOH A 41 341 128 HOH HOH . N 7 HOH A 42 342 107 HOH HOH . N 7 HOH A 43 343 127 HOH HOH . N 7 HOH A 44 344 39 HOH HOH . N 7 HOH A 45 345 21 HOH HOH . N 7 HOH A 46 346 133 HOH HOH . N 7 HOH A 47 347 124 HOH HOH . O 7 HOH B 1 301 148 HOH HOH . O 7 HOH B 2 302 118 HOH HOH . O 7 HOH B 3 303 149 HOH HOH . O 7 HOH B 4 304 94 HOH HOH . O 7 HOH B 5 305 136 HOH HOH . O 7 HOH B 6 306 129 HOH HOH . O 7 HOH B 7 307 143 HOH HOH . O 7 HOH B 8 308 17 HOH HOH . O 7 HOH B 9 309 79 HOH HOH . O 7 HOH B 10 310 75 HOH HOH . O 7 HOH B 11 311 99 HOH HOH . O 7 HOH B 12 312 71 HOH HOH . O 7 HOH B 13 313 144 HOH HOH . O 7 HOH B 14 314 93 HOH HOH . O 7 HOH B 15 315 2 HOH HOH . O 7 HOH B 16 316 116 HOH HOH . O 7 HOH B 17 317 7 HOH HOH . O 7 HOH B 18 318 24 HOH HOH . O 7 HOH B 19 319 14 HOH HOH . O 7 HOH B 20 320 146 HOH HOH . O 7 HOH B 21 321 15 HOH HOH . O 7 HOH B 22 322 122 HOH HOH . O 7 HOH B 23 323 117 HOH HOH . O 7 HOH B 24 324 78 HOH HOH . O 7 HOH B 25 325 36 HOH HOH . O 7 HOH B 26 326 95 HOH HOH . O 7 HOH B 27 327 92 HOH HOH . O 7 HOH B 28 328 151 HOH HOH . O 7 HOH B 29 329 20 HOH HOH . O 7 HOH B 30 330 59 HOH HOH . O 7 HOH B 31 331 90 HOH HOH . O 7 HOH B 32 332 6 HOH HOH . O 7 HOH B 33 333 84 HOH HOH . O 7 HOH B 34 334 147 HOH HOH . O 7 HOH B 35 335 150 HOH HOH . O 7 HOH B 36 336 145 HOH HOH . O 7 HOH B 37 337 38 HOH HOH . O 7 HOH B 38 338 134 HOH HOH . O 7 HOH B 39 339 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . L 5 35.607 -5.214 26.86 1 39.55 ? P PO4 204 B 1 HETATM 2 O O1 PO4 . . . L 5 34.727 -6.129 26.063 1 35.19 ? O1 PO4 204 B 1 HETATM 3 O O2 PO4 . . . L 5 35.546 -3.838 26.256 1 36.24 ? O2 PO4 204 B 1 HETATM 4 O O3 PO4 . . . L 5 37.029 -5.72 26.854 1 43.98 ? O3 PO4 204 B 1 HETATM 5 O O4 PO4 . . . L 5 35.126 -5.175 28.29 1 39.98 ? O4 PO4 204 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #