data_6VV8 # _model_server_result.job_id ZJ2y1rJrFnWKTXxIm4ubtg _model_server_result.datetime_utc '2024-11-24 11:35:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vv8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 6VV8 # _exptl.entry_id 6VV8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VV8 _cell.length_a 61.173 _cell.length_b 71.492 _cell.length_c 72.214 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VV8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc2 A NE2 HIS 159 A HIS 157 1_555 D CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? metalc ? metalc3 C CO CO . A CO 201 1_555 I O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 C CO CO . A CO 201 1_555 J O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 D CO CO . A CO 202 1_555 B NE2 HIS 40 B HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VV8 _atom_sites.fract_transf_matrix[1][1] 0.016347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 201 1 CO CO . D 2 CO A 1 202 2 CO CO . E 3 NAP A 1 203 1 NAP NDP . F 4 RPV A 1 204 2 RPV LIG . G 3 NAP B 1 201 2 NAP NDP . H 4 RPV B 1 202 1 RPV LIG . I 5 HOH A 1 301 25 HOH HOH . I 5 HOH A 2 302 10 HOH HOH . I 5 HOH A 3 303 26 HOH HOH . I 5 HOH A 4 304 14 HOH HOH . I 5 HOH A 5 305 27 HOH HOH . I 5 HOH A 6 306 16 HOH HOH . I 5 HOH A 7 307 34 HOH HOH . I 5 HOH A 8 308 5 HOH HOH . I 5 HOH A 9 309 19 HOH HOH . I 5 HOH A 10 310 2 HOH HOH . I 5 HOH A 11 311 35 HOH HOH . I 5 HOH A 12 312 33 HOH HOH . I 5 HOH A 13 313 36 HOH HOH . I 5 HOH A 14 314 40 HOH HOH . J 5 HOH B 1 301 6 HOH HOH . J 5 HOH B 2 302 12 HOH HOH . J 5 HOH B 3 303 9 HOH HOH . J 5 HOH B 4 304 20 HOH HOH . J 5 HOH B 5 305 1 HOH HOH . J 5 HOH B 6 306 11 HOH HOH . J 5 HOH B 7 307 3 HOH HOH . J 5 HOH B 8 308 4 HOH HOH . J 5 HOH B 9 309 7 HOH HOH . J 5 HOH B 10 310 21 HOH HOH . J 5 HOH B 11 311 23 HOH HOH . J 5 HOH B 12 312 29 HOH HOH . J 5 HOH B 13 313 28 HOH HOH . J 5 HOH B 14 314 18 HOH HOH . J 5 HOH B 15 315 8 HOH HOH . J 5 HOH B 16 316 38 HOH HOH . J 5 HOH B 17 317 37 HOH HOH . J 5 HOH B 18 318 15 HOH HOH . J 5 HOH B 19 319 31 HOH HOH . J 5 HOH B 20 320 39 HOH HOH . J 5 HOH B 21 321 22 HOH HOH . J 5 HOH B 22 322 30 HOH HOH . J 5 HOH B 23 323 17 HOH HOH . J 5 HOH B 24 324 32 HOH HOH . J 5 HOH B 25 325 24 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 53.551 _atom_site.Cartn_y 62.863 _atom_site.Cartn_z 15.301 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #