data_6VV8 # _model_server_result.job_id 1ZhxcggG4ocfygJmrwGInA _model_server_result.datetime_utc '2024-11-24 11:38:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vv8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 6VV8 # _exptl.entry_id 6VV8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VV8 _cell.length_a 61.173 _cell.length_b 71.492 _cell.length_c 72.214 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VV8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc2 A NE2 HIS 159 A HIS 157 1_555 D CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? metalc ? metalc3 C CO CO . A CO 201 1_555 I O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 C CO CO . A CO 201 1_555 J O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 D CO CO . A CO 202 1_555 B NE2 HIS 40 B HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 6VV8 _atom_sites.fract_transf_matrix[1][1] 0.016347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 201 1 CO CO . D 2 CO A 1 202 2 CO CO . E 3 NAP A 1 203 1 NAP NDP . F 4 RPV A 1 204 2 RPV LIG . G 3 NAP B 1 201 2 NAP NDP . H 4 RPV B 1 202 1 RPV LIG . I 5 HOH A 1 301 25 HOH HOH . I 5 HOH A 2 302 10 HOH HOH . I 5 HOH A 3 303 26 HOH HOH . I 5 HOH A 4 304 14 HOH HOH . I 5 HOH A 5 305 27 HOH HOH . I 5 HOH A 6 306 16 HOH HOH . I 5 HOH A 7 307 34 HOH HOH . I 5 HOH A 8 308 5 HOH HOH . I 5 HOH A 9 309 19 HOH HOH . I 5 HOH A 10 310 2 HOH HOH . I 5 HOH A 11 311 35 HOH HOH . I 5 HOH A 12 312 33 HOH HOH . I 5 HOH A 13 313 36 HOH HOH . I 5 HOH A 14 314 40 HOH HOH . J 5 HOH B 1 301 6 HOH HOH . J 5 HOH B 2 302 12 HOH HOH . J 5 HOH B 3 303 9 HOH HOH . J 5 HOH B 4 304 20 HOH HOH . J 5 HOH B 5 305 1 HOH HOH . J 5 HOH B 6 306 11 HOH HOH . J 5 HOH B 7 307 3 HOH HOH . J 5 HOH B 8 308 4 HOH HOH . J 5 HOH B 9 309 7 HOH HOH . J 5 HOH B 10 310 21 HOH HOH . J 5 HOH B 11 311 23 HOH HOH . J 5 HOH B 12 312 29 HOH HOH . J 5 HOH B 13 313 28 HOH HOH . J 5 HOH B 14 314 18 HOH HOH . J 5 HOH B 15 315 8 HOH HOH . J 5 HOH B 16 316 38 HOH HOH . J 5 HOH B 17 317 37 HOH HOH . J 5 HOH B 18 318 15 HOH HOH . J 5 HOH B 19 319 31 HOH HOH . J 5 HOH B 20 320 39 HOH HOH . J 5 HOH B 21 321 22 HOH HOH . J 5 HOH B 22 322 30 HOH HOH . J 5 HOH B 23 323 17 HOH HOH . J 5 HOH B 24 324 32 HOH HOH . J 5 HOH B 25 325 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 3 76.422 72.137 25.496 1 18.66 ? PA NAP 203 A 1 HETATM 2 O O1A NAP . . . E 3 75.642 73.284 26.05 1 22.74 ? O1A NAP 203 A 1 HETATM 3 O O2A NAP . . . E 3 75.868 71.252 24.412 1 23.39 ? O2A NAP 203 A 1 HETATM 4 O O5B NAP . . . E 3 76.75 71.189 26.786 1 29.47 ? O5B NAP 203 A 1 HETATM 5 C C5B NAP . . . E 3 78.116 70.839 26.648 1 29.44 ? C5B NAP 203 A 1 HETATM 6 C C4B NAP . . . E 3 78.391 69.883 27.794 1 32.62 ? C4B NAP 203 A 1 HETATM 7 O O4B NAP . . . E 3 77.406 68.843 27.801 1 34.44 ? O4B NAP 203 A 1 HETATM 8 C C3B NAP . . . E 3 79.755 69.203 27.663 1 33.18 ? C3B NAP 203 A 1 HETATM 9 O O3B NAP . . . E 3 80.771 70.027 28.154 1 37.67 ? O3B NAP 203 A 1 HETATM 10 C C2B NAP . . . E 3 79.542 68.082 28.682 1 34.36 ? C2B NAP 203 A 1 HETATM 11 O O2B NAP . . . E 3 79.519 68.51 29.92 1 33.62 ? O2B NAP 203 A 1 HETATM 12 C C1B NAP . . . E 3 78.066 67.687 28.371 1 33.53 ? C1B NAP 203 A 1 HETATM 13 N N9A NAP . . . E 3 77.984 66.571 27.452 1 30.8 ? N9A NAP 203 A 1 HETATM 14 C C8A NAP . . . E 3 78.22 66.554 26.068 1 32.33 ? C8A NAP 203 A 1 HETATM 15 N N7A NAP . . . E 3 78.047 65.33 25.519 1 33.77 ? N7A NAP 203 A 1 HETATM 16 C C5A NAP . . . E 3 77.676 64.518 26.618 1 32.08 ? C5A NAP 203 A 1 HETATM 17 C C6A NAP . . . E 3 77.353 63.141 26.721 1 30.41 ? C6A NAP 203 A 1 HETATM 18 N N6A NAP . . . E 3 77.376 62.314 25.608 1 28.26 ? N6A NAP 203 A 1 HETATM 19 N N1A NAP . . . E 3 77.021 62.578 27.924 1 31.8 ? N1A NAP 203 A 1 HETATM 20 C C2A NAP . . . E 3 77.033 63.451 28.996 1 34.44 ? C2A NAP 203 A 1 HETATM 21 N N3A NAP . . . E 3 77.316 64.77 29.062 1 33.42 ? N3A NAP 203 A 1 HETATM 22 C C4A NAP . . . E 3 77.641 65.289 27.826 1 31.29 ? C4A NAP 203 A 1 HETATM 23 O O3 NAP . . . E 3 77.867 72.841 24.98 1 26.36 ? O3 NAP 203 A 1 HETATM 24 P PN NAP . . . E 3 77.755 73.64 23.559 1 21.98 ? PN NAP 203 A 1 HETATM 25 O O1N NAP . . . E 3 78.985 74.444 23.406 1 22.12 ? O1N NAP 203 A 1 HETATM 26 O O2N NAP . . . E 3 77.225 72.882 22.362 1 28.14 ? O2N NAP 203 A 1 HETATM 27 O O5D NAP . . . E 3 76.491 74.836 23.714 1 28.82 ? O5D NAP 203 A 1 HETATM 28 C C5D NAP . . . E 3 76.992 75.928 24.372 1 25.43 ? C5D NAP 203 A 1 HETATM 29 C C4D NAP . . . E 3 76.478 77.173 23.634 1 27.25 ? C4D NAP 203 A 1 HETATM 30 O O4D NAP . . . E 3 75.103 77.025 23.165 1 27.51 ? O4D NAP 203 A 1 HETATM 31 C C3D NAP . . . E 3 76.472 78.353 24.608 1 27.36 ? C3D NAP 203 A 1 HETATM 32 O O3D NAP . . . E 3 77.127 79.357 23.936 1 26.16 ? O3D NAP 203 A 1 HETATM 33 C C2D NAP . . . E 3 74.928 78.611 24.793 1 26.2 ? C2D NAP 203 A 1 HETATM 34 O O2D NAP . . . E 3 74.544 79.926 25.07 1 27.21 ? O2D NAP 203 A 1 HETATM 35 C C1D NAP . . . E 3 74.438 78.261 23.413 1 24.5 ? C1D NAP 203 A 1 HETATM 36 N N1N NAP . . . E 3 72.976 78.059 23.447 1 28.52 ? N1N NAP 203 A 1 HETATM 37 C C2N NAP . . . E 3 72.192 78.708 22.526 1 26.76 ? C2N NAP 203 A 1 HETATM 38 C C3N NAP . . . E 3 70.869 78.437 22.417 1 25.27 ? C3N NAP 203 A 1 HETATM 39 C C7N NAP . . . E 3 70.13 79.166 21.397 1 26.91 ? C7N NAP 203 A 1 HETATM 40 O O7N NAP . . . E 3 70.636 79.903 20.531 1 23.85 ? O7N NAP 203 A 1 HETATM 41 N N7N NAP . . . E 3 68.761 78.996 21.4 1 28.25 ? N7N NAP 203 A 1 HETATM 42 C C4N NAP . . . E 3 70.2 77.441 23.257 1 26.67 ? C4N NAP 203 A 1 HETATM 43 C C5N NAP . . . E 3 71.068 76.927 24.336 1 26.34 ? C5N NAP 203 A 1 HETATM 44 C C6N NAP . . . E 3 72.368 77.219 24.403 1 28.26 ? C6N NAP 203 A 1 HETATM 45 P P2B NAP . . . E 3 80.915 67.948 30.882 1 37.58 ? P2B NAP 203 A 1 HETATM 46 O O1X NAP . . . E 3 80.789 66.473 30.647 1 39.04 ? O1X NAP 203 A 1 HETATM 47 O O2X NAP . . . E 3 82.052 68.694 30.178 1 36.67 ? O2X NAP 203 A 1 HETATM 48 O O3X NAP . . . E 3 80.404 68.497 32.185 1 33.2 ? O3X NAP 203 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 730 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #