data_6VV8 # _model_server_result.job_id '_RhN4k2JwFuhlrxahOM6PA' _model_server_result.datetime_utc '2024-11-24 12:12:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vv8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 6VV8 # _exptl.entry_id 6VV8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.393 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-{[3-(1H-indol-3-yl)propanoyl]amino}-1-phenyl-1H-pyrazole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VV8 _cell.length_a 61.173 _cell.length_b 71.492 _cell.length_c 72.214 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VV8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc2 A NE2 HIS 159 A HIS 157 1_555 D CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? metalc ? metalc3 C CO CO . A CO 201 1_555 I O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 C CO CO . A CO 201 1_555 J O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 D CO CO . A CO 202 1_555 B NE2 HIS 40 B HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? # _chem_comp.formula 'C21 H18 N4 O3' _chem_comp.formula_weight 374.393 _chem_comp.id RPV _chem_comp.mon_nstd_flag . _chem_comp.name '5-{[3-(1H-indol-3-yl)propanoyl]amino}-1-phenyl-1H-pyrazole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C09 RPV doub 357 n y C10 C11 RPV sing 358 n y C09 C08 RPV sing 359 n y C11 C12 RPV doub 360 n y C08 N07 RPV sing 361 n n C08 C13 RPV doub 362 n y N06 N07 RPV sing 363 n y N06 C05 RPV doub 364 n y C12 C13 RPV sing 365 n y O17 C16 RPV doub 366 n n N07 C14 RPV sing 367 n y C05 C04 RPV sing 368 n y C14 C04 RPV doub 369 n y C14 N15 RPV sing 370 n n C16 N15 RPV sing 371 n n C16 C18 RPV sing 372 n n C04 C02 RPV sing 373 n n C18 C19 RPV sing 374 n n C02 O03 RPV doub 375 n n C02 O01 RPV sing 376 n n C19 C20 RPV sing 377 n n C21 C20 RPV doub 378 n y C21 N22 RPV sing 379 n y C20 C28 RPV sing 380 n y N22 C23 RPV sing 381 n y C28 C23 RPV doub 382 n y C28 C27 RPV sing 383 n y C23 C24 RPV sing 384 n y C27 C26 RPV doub 385 n y C24 C25 RPV doub 386 n y C26 C25 RPV sing 387 n y C10 H1 RPV sing 388 n n C13 H2 RPV sing 389 n n C21 H3 RPV sing 390 n n C24 H4 RPV sing 391 n n C26 H5 RPV sing 392 n n O01 H6 RPV sing 393 n n C05 H7 RPV sing 394 n n C09 H8 RPV sing 395 n n C11 H9 RPV sing 396 n n C12 H10 RPV sing 397 n n N15 H11 RPV sing 398 n n C18 H12 RPV sing 399 n n C18 H13 RPV sing 400 n n C19 H14 RPV sing 401 n n C19 H15 RPV sing 402 n n N22 H16 RPV sing 403 n n C25 H17 RPV sing 404 n n C27 H18 RPV sing 405 n n # _atom_sites.entry_id 6VV8 _atom_sites.fract_transf_matrix[1][1] 0.016347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 201 1 CO CO . D 2 CO A 1 202 2 CO CO . E 3 NAP A 1 203 1 NAP NDP . F 4 RPV A 1 204 2 RPV LIG . G 3 NAP B 1 201 2 NAP NDP . H 4 RPV B 1 202 1 RPV LIG . I 5 HOH A 1 301 25 HOH HOH . I 5 HOH A 2 302 10 HOH HOH . I 5 HOH A 3 303 26 HOH HOH . I 5 HOH A 4 304 14 HOH HOH . I 5 HOH A 5 305 27 HOH HOH . I 5 HOH A 6 306 16 HOH HOH . I 5 HOH A 7 307 34 HOH HOH . I 5 HOH A 8 308 5 HOH HOH . I 5 HOH A 9 309 19 HOH HOH . I 5 HOH A 10 310 2 HOH HOH . I 5 HOH A 11 311 35 HOH HOH . I 5 HOH A 12 312 33 HOH HOH . I 5 HOH A 13 313 36 HOH HOH . I 5 HOH A 14 314 40 HOH HOH . J 5 HOH B 1 301 6 HOH HOH . J 5 HOH B 2 302 12 HOH HOH . J 5 HOH B 3 303 9 HOH HOH . J 5 HOH B 4 304 20 HOH HOH . J 5 HOH B 5 305 1 HOH HOH . J 5 HOH B 6 306 11 HOH HOH . J 5 HOH B 7 307 3 HOH HOH . J 5 HOH B 8 308 4 HOH HOH . J 5 HOH B 9 309 7 HOH HOH . J 5 HOH B 10 310 21 HOH HOH . J 5 HOH B 11 311 23 HOH HOH . J 5 HOH B 12 312 29 HOH HOH . J 5 HOH B 13 313 28 HOH HOH . J 5 HOH B 14 314 18 HOH HOH . J 5 HOH B 15 315 8 HOH HOH . J 5 HOH B 16 316 38 HOH HOH . J 5 HOH B 17 317 37 HOH HOH . J 5 HOH B 18 318 15 HOH HOH . J 5 HOH B 19 319 31 HOH HOH . J 5 HOH B 20 320 39 HOH HOH . J 5 HOH B 21 321 22 HOH HOH . J 5 HOH B 22 322 30 HOH HOH . J 5 HOH B 23 323 17 HOH HOH . J 5 HOH B 24 324 32 HOH HOH . J 5 HOH B 25 325 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RPV . . . F 4 67.362 86.072 30.605 1 63.41 ? C10 RPV 204 A 1 HETATM 2 C C13 RPV . . . F 4 67.198 83.306 30.369 1 61.39 ? C13 RPV 204 A 1 HETATM 3 C C20 RPV . . . F 4 66.628 80.907 25.387 1 49.92 ? C20 RPV 204 A 1 HETATM 4 C C21 RPV . . . F 4 66.319 80.486 24.086 1 48.14 ? C21 RPV 204 A 1 HETATM 5 C C24 RPV . . . F 4 67.976 77.624 25.42 1 62.66 ? C24 RPV 204 A 1 HETATM 6 C C26 RPV . . . F 4 68.427 78.48 27.638 1 55.32 ? C26 RPV 204 A 1 HETATM 7 C C28 RPV . . . F 4 67.282 79.835 26.005 1 51.5 ? C28 RPV 204 A 1 HETATM 8 O O01 RPV . . . F 4 62.239 80.321 30.311 1 32.58 ? O01 RPV 204 A 1 HETATM 9 C C02 RPV . . . F 4 62.16 81.142 31.274 1 40.7 ? C02 RPV 204 A 1 HETATM 10 O O03 RPV . . . F 4 61.192 81.155 32.086 1 41.27 -1 O03 RPV 204 A 1 HETATM 11 C C04 RPV . . . F 4 63.263 82.158 31.51 1 48.61 ? C04 RPV 204 A 1 HETATM 12 C C05 RPV . . . F 4 63.374 82.936 32.643 1 51.9 ? C05 RPV 204 A 1 HETATM 13 N N06 RPV . . . F 4 64.449 83.687 32.512 1 54.46 ? N06 RPV 204 A 1 HETATM 14 N N07 RPV . . . F 4 65.036 83.415 31.31 1 56.24 ? N07 RPV 204 A 1 HETATM 15 C C08 RPV . . . F 4 66.137 84.027 30.9 1 60.03 ? C08 RPV 204 A 1 HETATM 16 C C09 RPV . . . F 4 66.221 85.407 31.023 1 61.4 ? C09 RPV 204 A 1 HETATM 17 C C11 RPV . . . F 4 68.418 85.353 30.071 1 66.39 ? C11 RPV 204 A 1 HETATM 18 C C12 RPV . . . F 4 68.34 83.972 29.953 1 62.78 ? C12 RPV 204 A 1 HETATM 19 C C14 RPV . . . F 4 64.331 82.473 30.677 1 54.51 ? C14 RPV 204 A 1 HETATM 20 N N15 RPV . . . F 4 64.554 81.866 29.361 1 47.34 ? N15 RPV 204 A 1 HETATM 21 C C16 RPV . . . F 4 64.771 82.689 28.18 1 46.46 ? C16 RPV 204 A 1 HETATM 22 O O17 RPV . . . F 4 64.777 83.867 28.288 1 48.85 ? O17 RPV 204 A 1 HETATM 23 C C18 RPV . . . F 4 64.97 82.037 26.809 1 39.56 ? C18 RPV 204 A 1 HETATM 24 C C19 RPV . . . F 4 66.312 82.224 26.102 1 42.95 ? C19 RPV 204 A 1 HETATM 25 N N22 RPV . . . F 4 66.771 79.242 23.92 1 43.81 ? N22 RPV 204 A 1 HETATM 26 C C23 RPV . . . F 4 67.357 78.827 25.061 1 53.33 ? C23 RPV 204 A 1 HETATM 27 C C25 RPV . . . F 4 68.511 77.46 26.696 1 63.44 ? C25 RPV 204 A 1 HETATM 28 C C27 RPV . . . F 4 67.812 79.672 27.295 1 49.67 ? C27 RPV 204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #