data_6VV9 # _model_server_result.job_id wCT7xmUPNSgkdcoxML5srg _model_server_result.datetime_utc '2024-11-27 05:21:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 6VV9 # _exptl.entry_id 6VV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VV9 _cell.length_a 61.18 _cell.length_b 70.873 _cell.length_c 72.081 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,N 1 1 B,G,H,I,J,K,L,M,O 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 G CO CO . B CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc2 N O HOH . A HOH 312 1_555 G CO CO . B CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc3 N O HOH . A HOH 334 1_555 I CO CO . B CO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc4 B NE2 HIS 40 B HIS 38 1_555 I CO CO . B CO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 B NE2 HIS 159 B HIS 157 1_555 G CO CO . B CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? metalc ? metalc6 G CO CO . B CO 301 1_555 O O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc7 G CO CO . B CO 301 1_555 O O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 I CO CO . B CO 303 1_555 O O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc9 I CO CO . B CO 303 1_555 O O HOH . B HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 342 n n P O2 PO4 sing 343 n n P O3 PO4 sing 344 n n P O4 PO4 sing 345 n n # _atom_sites.entry_id 6VV9 _atom_sites.fract_transf_matrix[1][1] 0.016345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 201 201 NDP NDP . D 3 RQ1 A 1 202 401 RQ1 LIG . E 4 PO4 A 1 203 2 PO4 PO4 . F 4 PO4 A 1 204 4 PO4 PO4 . G 5 CO B 1 301 301 CO CO . H 2 NDP B 1 302 201 NDP NDP . I 5 CO B 1 303 301 CO CO . J 3 RQ1 B 1 304 401 RQ1 LIG . K 4 PO4 B 1 305 1 PO4 PO4 . L 4 PO4 B 1 306 3 PO4 PO4 . M 4 PO4 B 1 307 5 PO4 PO4 . N 6 HOH A 1 301 57 HOH HOH . N 6 HOH A 2 302 44 HOH HOH . N 6 HOH A 3 303 79 HOH HOH . N 6 HOH A 4 304 64 HOH HOH . N 6 HOH A 5 305 54 HOH HOH . N 6 HOH A 6 306 76 HOH HOH . N 6 HOH A 7 307 87 HOH HOH . N 6 HOH A 8 308 78 HOH HOH . N 6 HOH A 9 309 69 HOH HOH . N 6 HOH A 10 310 77 HOH HOH . N 6 HOH A 11 311 55 HOH HOH . N 6 HOH A 12 312 74 HOH HOH . N 6 HOH A 13 313 53 HOH HOH . N 6 HOH A 14 314 10 HOH HOH . N 6 HOH A 15 315 61 HOH HOH . N 6 HOH A 16 316 12 HOH HOH . N 6 HOH A 17 317 28 HOH HOH . N 6 HOH A 18 318 35 HOH HOH . N 6 HOH A 19 319 4 HOH HOH . N 6 HOH A 20 320 8 HOH HOH . N 6 HOH A 21 321 86 HOH HOH . N 6 HOH A 22 322 41 HOH HOH . N 6 HOH A 23 323 14 HOH HOH . N 6 HOH A 24 324 58 HOH HOH . N 6 HOH A 25 325 85 HOH HOH . N 6 HOH A 26 326 45 HOH HOH . N 6 HOH A 27 327 62 HOH HOH . N 6 HOH A 28 328 38 HOH HOH . N 6 HOH A 29 329 63 HOH HOH . N 6 HOH A 30 330 21 HOH HOH . N 6 HOH A 31 331 3 HOH HOH . N 6 HOH A 32 332 6 HOH HOH . N 6 HOH A 33 333 1 HOH HOH . N 6 HOH A 34 334 2 HOH HOH . N 6 HOH A 35 335 29 HOH HOH . N 6 HOH A 36 336 56 HOH HOH . N 6 HOH A 37 337 43 HOH HOH . N 6 HOH A 38 338 36 HOH HOH . N 6 HOH A 39 339 66 HOH HOH . N 6 HOH A 40 340 46 HOH HOH . N 6 HOH A 41 341 37 HOH HOH . N 6 HOH A 42 342 67 HOH HOH . N 6 HOH A 43 343 65 HOH HOH . N 6 HOH A 44 344 59 HOH HOH . N 6 HOH A 45 345 30 HOH HOH . N 6 HOH A 46 346 39 HOH HOH . N 6 HOH A 47 347 81 HOH HOH . N 6 HOH A 48 348 71 HOH HOH . N 6 HOH A 49 349 72 HOH HOH . N 6 HOH A 50 350 52 HOH HOH . N 6 HOH A 51 351 68 HOH HOH . O 6 HOH B 1 401 82 HOH HOH . O 6 HOH B 2 402 13 HOH HOH . O 6 HOH B 3 403 83 HOH HOH . O 6 HOH B 4 404 40 HOH HOH . O 6 HOH B 5 405 75 HOH HOH . O 6 HOH B 6 406 60 HOH HOH . O 6 HOH B 7 407 42 HOH HOH . O 6 HOH B 8 408 50 HOH HOH . O 6 HOH B 9 409 5 HOH HOH . O 6 HOH B 10 410 23 HOH HOH . O 6 HOH B 11 411 70 HOH HOH . O 6 HOH B 12 412 16 HOH HOH . O 6 HOH B 13 413 51 HOH HOH . O 6 HOH B 14 414 32 HOH HOH . O 6 HOH B 15 415 19 HOH HOH . O 6 HOH B 16 416 11 HOH HOH . O 6 HOH B 17 417 15 HOH HOH . O 6 HOH B 18 418 26 HOH HOH . O 6 HOH B 19 419 27 HOH HOH . O 6 HOH B 20 420 20 HOH HOH . O 6 HOH B 21 421 22 HOH HOH . O 6 HOH B 22 422 34 HOH HOH . O 6 HOH B 23 423 9 HOH HOH . O 6 HOH B 24 424 18 HOH HOH . O 6 HOH B 25 425 25 HOH HOH . O 6 HOH B 26 426 24 HOH HOH . O 6 HOH B 27 427 48 HOH HOH . O 6 HOH B 28 428 7 HOH HOH . O 6 HOH B 29 429 31 HOH HOH . O 6 HOH B 30 430 17 HOH HOH . O 6 HOH B 31 431 49 HOH HOH . O 6 HOH B 32 432 33 HOH HOH . O 6 HOH B 33 433 80 HOH HOH . O 6 HOH B 34 434 47 HOH HOH . O 6 HOH B 35 435 84 HOH HOH . O 6 HOH B 36 436 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 4 -3.316 7.883 6.604 1 96.41 ? P PO4 204 A 1 HETATM 2 O O1 PO4 . . . F 4 -3.986 7.276 5.353 1 98.11 ? O1 PO4 204 A 1 HETATM 3 O O2 PO4 . . . F 4 -4.432 7.832 7.591 1 96.04 ? O2 PO4 204 A 1 HETATM 4 O O3 PO4 . . . F 4 -2.067 7.032 7.009 1 94.05 ? O3 PO4 204 A 1 HETATM 5 O O4 PO4 . . . F 4 -2.866 9.302 6.565 1 95.63 ? O4 PO4 204 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 98 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #