data_6VVB # _model_server_result.job_id lpY-7UHwORfiCMUesFv0OQ _model_server_result.datetime_utc '2024-11-14 01:35:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6VVB # _exptl.entry_id 6VVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.383 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.89 _cell.angle_gamma 90 _cell.entry_id 6VVB _cell.length_a 67.86 _cell.length_b 73.73 _cell.length_c 36.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H30 O8' _chem_comp.formula_weight 326.383 _chem_comp.id P33 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HEPTAETHYLENE GLYCOL;PEG330' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 P33 sing 317 n n O22 H22 P33 sing 318 n n C21 C20 P33 sing 319 n n C21 H211 P33 sing 320 n n C21 H212 P33 sing 321 n n C20 O19 P33 sing 322 n n C20 H201 P33 sing 323 n n C20 H202 P33 sing 324 n n O19 C18 P33 sing 325 n n C18 C17 P33 sing 326 n n C18 H181 P33 sing 327 n n C18 H182 P33 sing 328 n n C17 O16 P33 sing 329 n n C17 H171 P33 sing 330 n n C17 H172 P33 sing 331 n n O16 C15 P33 sing 332 n n C15 C14 P33 sing 333 n n C15 H151 P33 sing 334 n n C15 H152 P33 sing 335 n n C14 O13 P33 sing 336 n n C14 H141 P33 sing 337 n n C14 H142 P33 sing 338 n n O13 C12 P33 sing 339 n n C12 C11 P33 sing 340 n n C12 H121 P33 sing 341 n n C12 H122 P33 sing 342 n n C11 O10 P33 sing 343 n n C11 H111 P33 sing 344 n n C11 H112 P33 sing 345 n n O10 C9 P33 sing 346 n n C9 C8 P33 sing 347 n n C9 H91 P33 sing 348 n n C9 H92 P33 sing 349 n n C8 O7 P33 sing 350 n n C8 H81 P33 sing 351 n n C8 H82 P33 sing 352 n n O7 C6 P33 sing 353 n n C6 C5 P33 sing 354 n n C6 H61 P33 sing 355 n n C6 H62 P33 sing 356 n n C5 O4 P33 sing 357 n n C5 H51 P33 sing 358 n n C5 H52 P33 sing 359 n n O4 C3 P33 sing 360 n n C3 C2 P33 sing 361 n n C3 H31 P33 sing 362 n n C3 H32 P33 sing 363 n n C2 O1 P33 sing 364 n n C2 H21 P33 sing 365 n n C2 H22A P33 sing 366 n n O1 HO1 P33 sing 367 n n # _atom_sites.entry_id 6VVB _atom_sites.fract_transf_matrix[1][1] 0.014736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002569 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RQ4 A 1 201 201 RQ4 DRG . C 3 P33 A 1 202 301 P33 LIG . D 4 NAP A 1 203 401 NAP NDP . E 5 HOH A 1 301 173 HOH HOH . E 5 HOH A 2 302 109 HOH HOH . E 5 HOH A 3 303 71 HOH HOH . E 5 HOH A 4 304 147 HOH HOH . E 5 HOH A 5 305 131 HOH HOH . E 5 HOH A 6 306 152 HOH HOH . E 5 HOH A 7 307 13 HOH HOH . E 5 HOH A 8 308 103 HOH HOH . E 5 HOH A 9 309 163 HOH HOH . E 5 HOH A 10 310 41 HOH HOH . E 5 HOH A 11 311 85 HOH HOH . E 5 HOH A 12 312 43 HOH HOH . E 5 HOH A 13 313 27 HOH HOH . E 5 HOH A 14 314 28 HOH HOH . E 5 HOH A 15 315 138 HOH HOH . E 5 HOH A 16 316 69 HOH HOH . E 5 HOH A 17 317 31 HOH HOH . E 5 HOH A 18 318 25 HOH HOH . E 5 HOH A 19 319 117 HOH HOH . E 5 HOH A 20 320 164 HOH HOH . E 5 HOH A 21 321 54 HOH HOH . E 5 HOH A 22 322 51 HOH HOH . E 5 HOH A 23 323 97 HOH HOH . E 5 HOH A 24 324 8 HOH HOH . E 5 HOH A 25 325 21 HOH HOH . E 5 HOH A 26 326 58 HOH HOH . E 5 HOH A 27 327 63 HOH HOH . E 5 HOH A 28 328 160 HOH HOH . E 5 HOH A 29 329 29 HOH HOH . E 5 HOH A 30 330 99 HOH HOH . E 5 HOH A 31 331 91 HOH HOH . E 5 HOH A 32 332 1 HOH HOH . E 5 HOH A 33 333 6 HOH HOH . E 5 HOH A 34 334 84 HOH HOH . E 5 HOH A 35 335 5 HOH HOH . E 5 HOH A 36 336 10 HOH HOH . E 5 HOH A 37 337 33 HOH HOH . E 5 HOH A 38 338 128 HOH HOH . E 5 HOH A 39 339 32 HOH HOH . E 5 HOH A 40 340 20 HOH HOH . E 5 HOH A 41 341 48 HOH HOH . E 5 HOH A 42 342 74 HOH HOH . E 5 HOH A 43 343 82 HOH HOH . E 5 HOH A 44 344 90 HOH HOH . E 5 HOH A 45 345 3 HOH HOH . E 5 HOH A 46 346 108 HOH HOH . E 5 HOH A 47 347 36 HOH HOH . E 5 HOH A 48 348 171 HOH HOH . E 5 HOH A 49 349 14 HOH HOH . E 5 HOH A 50 350 22 HOH HOH . E 5 HOH A 51 351 107 HOH HOH . E 5 HOH A 52 352 44 HOH HOH . E 5 HOH A 53 353 60 HOH HOH . E 5 HOH A 54 354 38 HOH HOH . E 5 HOH A 55 355 40 HOH HOH . E 5 HOH A 56 356 65 HOH HOH . E 5 HOH A 57 357 11 HOH HOH . E 5 HOH A 58 358 161 HOH HOH . E 5 HOH A 59 359 106 HOH HOH . E 5 HOH A 60 360 105 HOH HOH . E 5 HOH A 61 361 18 HOH HOH . E 5 HOH A 62 362 61 HOH HOH . E 5 HOH A 63 363 112 HOH HOH . E 5 HOH A 64 364 42 HOH HOH . E 5 HOH A 65 365 169 HOH HOH . E 5 HOH A 66 366 53 HOH HOH . E 5 HOH A 67 367 94 HOH HOH . E 5 HOH A 68 368 111 HOH HOH . E 5 HOH A 69 369 35 HOH HOH . E 5 HOH A 70 370 95 HOH HOH . E 5 HOH A 71 371 15 HOH HOH . E 5 HOH A 72 372 72 HOH HOH . E 5 HOH A 73 373 123 HOH HOH . E 5 HOH A 74 374 66 HOH HOH . E 5 HOH A 75 375 87 HOH HOH . E 5 HOH A 76 376 56 HOH HOH . E 5 HOH A 77 377 50 HOH HOH . E 5 HOH A 78 378 7 HOH HOH . E 5 HOH A 79 379 2 HOH HOH . E 5 HOH A 80 380 73 HOH HOH . E 5 HOH A 81 381 17 HOH HOH . E 5 HOH A 82 382 59 HOH HOH . E 5 HOH A 83 383 49 HOH HOH . E 5 HOH A 84 384 96 HOH HOH . E 5 HOH A 85 385 159 HOH HOH . E 5 HOH A 86 386 167 HOH HOH . E 5 HOH A 87 387 133 HOH HOH . E 5 HOH A 88 388 98 HOH HOH . E 5 HOH A 89 389 118 HOH HOH . E 5 HOH A 90 390 26 HOH HOH . E 5 HOH A 91 391 77 HOH HOH . E 5 HOH A 92 392 141 HOH HOH . E 5 HOH A 93 393 113 HOH HOH . E 5 HOH A 94 394 45 HOH HOH . E 5 HOH A 95 395 81 HOH HOH . E 5 HOH A 96 396 4 HOH HOH . E 5 HOH A 97 397 46 HOH HOH . E 5 HOH A 98 398 57 HOH HOH . E 5 HOH A 99 399 16 HOH HOH . E 5 HOH A 100 400 52 HOH HOH . E 5 HOH A 101 401 166 HOH HOH . E 5 HOH A 102 402 140 HOH HOH . E 5 HOH A 103 403 24 HOH HOH . E 5 HOH A 104 404 110 HOH HOH . E 5 HOH A 105 405 121 HOH HOH . E 5 HOH A 106 406 89 HOH HOH . E 5 HOH A 107 407 47 HOH HOH . E 5 HOH A 108 408 23 HOH HOH . E 5 HOH A 109 409 62 HOH HOH . E 5 HOH A 110 410 92 HOH HOH . E 5 HOH A 111 411 168 HOH HOH . E 5 HOH A 112 412 102 HOH HOH . E 5 HOH A 113 413 68 HOH HOH . E 5 HOH A 114 414 37 HOH HOH . E 5 HOH A 115 415 80 HOH HOH . E 5 HOH A 116 416 67 HOH HOH . E 5 HOH A 117 417 126 HOH HOH . E 5 HOH A 118 418 165 HOH HOH . E 5 HOH A 119 419 83 HOH HOH . E 5 HOH A 120 420 125 HOH HOH . E 5 HOH A 121 421 143 HOH HOH . E 5 HOH A 122 422 100 HOH HOH . E 5 HOH A 123 423 19 HOH HOH . E 5 HOH A 124 424 132 HOH HOH . E 5 HOH A 125 425 170 HOH HOH . E 5 HOH A 126 426 64 HOH HOH . E 5 HOH A 127 427 136 HOH HOH . E 5 HOH A 128 428 153 HOH HOH . E 5 HOH A 129 429 116 HOH HOH . E 5 HOH A 130 430 162 HOH HOH . E 5 HOH A 131 431 139 HOH HOH . E 5 HOH A 132 432 12 HOH HOH . E 5 HOH A 133 433 75 HOH HOH . E 5 HOH A 134 434 172 HOH HOH . E 5 HOH A 135 435 76 HOH HOH . E 5 HOH A 136 436 119 HOH HOH . E 5 HOH A 137 437 9 HOH HOH . E 5 HOH A 138 438 129 HOH HOH . E 5 HOH A 139 439 130 HOH HOH . E 5 HOH A 140 440 175 HOH HOH . E 5 HOH A 141 441 158 HOH HOH . E 5 HOH A 142 442 30 HOH HOH . E 5 HOH A 143 443 114 HOH HOH . E 5 HOH A 144 444 156 HOH HOH . E 5 HOH A 145 445 174 HOH HOH . E 5 HOH A 146 446 86 HOH HOH . E 5 HOH A 147 447 55 HOH HOH . E 5 HOH A 148 448 93 HOH HOH . E 5 HOH A 149 449 157 HOH HOH . E 5 HOH A 150 450 104 HOH HOH . E 5 HOH A 151 451 149 HOH HOH . E 5 HOH A 152 452 122 HOH HOH . E 5 HOH A 153 453 79 HOH HOH . E 5 HOH A 154 454 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 P33 . . . C 3 -2.321 4.862 3.957 0.5 30.52 ? O22 P33 202 A 1 HETATM 2 C C21 P33 . . . C 3 -1.074 5.484 3.785 0.5 29.82 ? C21 P33 202 A 1 HETATM 3 C C20 P33 . . . C 3 -0.089 4.429 3.282 0.5 28.39 ? C20 P33 202 A 1 HETATM 4 O O19 P33 . . . C 3 1.231 4.876 3.44 0.5 28.02 ? O19 P33 202 A 1 HETATM 5 C C18 P33 . . . C 3 2.173 3.835 3.4 0.5 26.31 ? C18 P33 202 A 1 HETATM 6 C C17 P33 . . . C 3 2.232 3.285 1.974 0.5 26.55 ? C17 P33 202 A 1 HETATM 7 O O16 P33 . . . C 3 2.659 1.946 1.97 0.5 27.73 ? O16 P33 202 A 1 HETATM 8 C C15 P33 . . . C 3 2.716 1.404 0.68 0.5 26.79 ? C15 P33 202 A 1 HETATM 9 C C14 P33 . . . C 3 1.707 0.264 0.532 0.5 24.64 ? C14 P33 202 A 1 HETATM 10 O O13 P33 . . . C 3 0.447 0.757 0.155 0.5 21.46 ? O13 P33 202 A 1 HETATM 11 C C12 P33 . . . C 3 -0.422 -0.259 -0.257 0.5 21.1 ? C12 P33 202 A 1 HETATM 12 C C11 P33 . . . C 3 -1.851 0.134 0.093 0.5 19.71 ? C11 P33 202 A 1 HETATM 13 O O10 P33 . . . C 3 -2.41 0.775 -1.02 0.5 22.53 ? O10 P33 202 A 1 HETATM 14 C C9 P33 . . . C 3 -3.5 1.566 -0.636 0.5 24.74 ? C9 P33 202 A 1 HETATM 15 C C8 P33 . . . C 3 -4.26 2.117 -1.838 0.5 26.15 ? C8 P33 202 A 1 HETATM 16 O O7 P33 . . . C 3 -3.37 2.379 -2.876 0.5 26.72 ? O7 P33 202 A 1 HETATM 17 C C6 P33 . . . C 3 -2.49 3.426 -2.592 0.5 26.57 ? C6 P33 202 A 1 HETATM 18 C C5 P33 . . . C 3 -2.587 4.458 -3.706 0.5 28.34 ? C5 P33 202 A 1 HETATM 19 O O4 P33 . . . C 3 -1.348 4.528 -4.348 0.5 29.99 ? O4 P33 202 A 1 HETATM 20 C C3 P33 . . . C 3 -0.44 5.397 -3.731 0.5 30.71 ? C3 P33 202 A 1 HETATM 21 C C2 P33 . . . C 3 0.752 4.568 -3.252 0.5 31.15 ? C2 P33 202 A 1 HETATM 22 O O1 P33 . . . C 3 1.706 5.427 -2.692 0.5 31.52 ? O1 P33 202 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 528 _model_server_stats.encode_time_ms 59 _model_server_stats.element_count 22 #