data_6VVU # _model_server_result.job_id 6N_5hmyUvNU2a59srr1DoA _model_server_result.datetime_utc '2024-10-31 15:35:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":301}' # _entry.id 6VVU # _exptl.entry_id 6VVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.97 _cell.angle_gamma 90 _cell.entry_id 6VVU _cell.length_a 89.573 _cell.length_b 168.811 _cell.length_c 114.652 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 O N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 42 1_555 A SG CYS 75 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 155 A CYS 136 1_555 A SG CYS 230 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 188 A CYS 168 1_555 A SG CYS 211 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 220 A CYS 191 1_555 A SG CYS 248 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 B SG CYS 59 B CYS 42 1_555 B SG CYS 75 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf6 B SG CYS 188 B CYS 168 1_555 B SG CYS 211 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 B SG CYS 220 B CYS 191 1_555 B SG CYS 248 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 C SG CYS 59 D CYS 42 1_555 C SG CYS 75 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf9 C SG CYS 155 D CYS 136 1_555 C SG CYS 230 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 C SG CYS 188 D CYS 168 1_555 C SG CYS 211 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 C SG CYS 220 D CYS 191 1_555 C SG CYS 248 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 D SG CYS 59 C CYS 42 1_555 D SG CYS 75 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf13 D SG CYS 155 C CYS 136 1_555 D SG CYS 230 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 D SG CYS 188 C CYS 168 1_555 D SG CYS 211 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf15 D SG CYS 220 C CYS 191 1_555 D SG CYS 248 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf16 E SG CYS 149 E CYS 140 1_555 E SG CYS 205 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf17 F SG CYS 23 F CYS 23 1_555 F SG CYS 89 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf18 F SG CYS 137 F CYS 134 1_555 F SG CYS 197 F CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf19 G SG CYS 22 G CYS 22 1_555 G SG CYS 95 G CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf20 G SG CYS 149 G CYS 140 1_555 G SG CYS 205 G CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf21 H SG CYS 22 H CYS 22 1_555 H SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf22 H SG CYS 149 H CYS 140 1_555 H SG CYS 205 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 I SG CYS 23 I CYS 23 1_555 I SG CYS 89 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf24 I SG CYS 137 I CYS 134 1_555 I SG CYS 197 I CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf25 J SG CYS 22 J CYS 22 1_555 J SG CYS 95 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf26 J SG CYS 149 J CYS 140 1_555 J SG CYS 205 J CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf27 J SG CYS 225 J CYS 216 1_555 K SG CYS 217 K CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf28 K SG CYS 23 K CYS 23 1_555 K SG CYS 89 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf29 K SG CYS 137 K CYS 134 1_555 K SG CYS 197 K CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf30 L SG CYS 23 L CYS 23 1_555 L SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf31 L SG CYS 137 L CYS 134 1_555 L SG CYS 197 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A NE2 HIS 74 A HIS 57 1_555 N C3 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale2 A OG SER 224 A SER 195 1_555 N C2 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 B NE2 HIS 74 B HIS 57 1_555 P C3 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale4 B OG SER 224 B SER 195 1_555 P C2 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale5 C NE2 HIS 74 D HIS 57 1_555 R C3 0GJ . D 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale6 C OG SER 224 D SER 195 1_555 R C2 0GJ . D 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale7 D NE2 HIS 74 C HIS 57 1_555 S C3 0GJ . C 0GJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 D OG SER 224 C SER 195 1_555 S C2 0GJ . C 0GJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? metalc ? metalc1 M CA CA . A CA 301 1_555 N OE1 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc2 O CA CA . B CA 301 1_555 P OE1 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc3 O CA CA . B CA 301 1_555 P OE2 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc4 Q CA CA . D CA 301 1_555 R OE1 0GJ . D 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VVU _atom_sites.fract_transf_matrix[1][1] 0.011164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004056 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 CA A 1 301 3 CA CA . N 5 0GJ A 1 302 1 0GJ 0GJ . O 4 CA B 1 301 1 CA CA . P 5 0GJ B 1 302 1 0GJ 0GJ . Q 4 CA D 1 301 2 CA CA . R 5 0GJ D 1 302 1 0GJ 0GJ . S 5 0GJ C 1 301 1 0GJ 0GJ . T 6 HOH D 1 401 5 HOH HOH . U 6 HOH K 1 301 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 4 _atom_site.Cartn_x 28.935 _atom_site.Cartn_y 5.776 _atom_site.Cartn_z 67.529 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 98.52 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 1 #