data_6VVU # _model_server_result.job_id PFWxwQmSc459U5t10Vm0GA _model_server_result.datetime_utc '2024-10-31 15:17:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":302}' # _entry.id 6VVU # _exptl.entry_id 6VVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.862 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.97 _cell.angle_gamma 90 _cell.entry_id 6VVU _cell.length_a 89.573 _cell.length_b 168.811 _cell.length_c 114.652 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 P N N ? 5 R N N ? 5 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 42 1_555 A SG CYS 75 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 155 A CYS 136 1_555 A SG CYS 230 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 188 A CYS 168 1_555 A SG CYS 211 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 220 A CYS 191 1_555 A SG CYS 248 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 B SG CYS 59 B CYS 42 1_555 B SG CYS 75 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf6 B SG CYS 188 B CYS 168 1_555 B SG CYS 211 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 B SG CYS 220 B CYS 191 1_555 B SG CYS 248 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 C SG CYS 59 D CYS 42 1_555 C SG CYS 75 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf9 C SG CYS 155 D CYS 136 1_555 C SG CYS 230 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 C SG CYS 188 D CYS 168 1_555 C SG CYS 211 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 C SG CYS 220 D CYS 191 1_555 C SG CYS 248 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 D SG CYS 59 C CYS 42 1_555 D SG CYS 75 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf13 D SG CYS 155 C CYS 136 1_555 D SG CYS 230 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 D SG CYS 188 C CYS 168 1_555 D SG CYS 211 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf15 D SG CYS 220 C CYS 191 1_555 D SG CYS 248 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf16 E SG CYS 149 E CYS 140 1_555 E SG CYS 205 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf17 F SG CYS 23 F CYS 23 1_555 F SG CYS 89 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf18 F SG CYS 137 F CYS 134 1_555 F SG CYS 197 F CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf19 G SG CYS 22 G CYS 22 1_555 G SG CYS 95 G CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf20 G SG CYS 149 G CYS 140 1_555 G SG CYS 205 G CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf21 H SG CYS 22 H CYS 22 1_555 H SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf22 H SG CYS 149 H CYS 140 1_555 H SG CYS 205 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 I SG CYS 23 I CYS 23 1_555 I SG CYS 89 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf24 I SG CYS 137 I CYS 134 1_555 I SG CYS 197 I CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf25 J SG CYS 22 J CYS 22 1_555 J SG CYS 95 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf26 J SG CYS 149 J CYS 140 1_555 J SG CYS 205 J CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf27 J SG CYS 225 J CYS 216 1_555 K SG CYS 217 K CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf28 K SG CYS 23 K CYS 23 1_555 K SG CYS 89 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf29 K SG CYS 137 K CYS 134 1_555 K SG CYS 197 K CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf30 L SG CYS 23 L CYS 23 1_555 L SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf31 L SG CYS 137 L CYS 134 1_555 L SG CYS 197 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A NE2 HIS 74 A HIS 57 1_555 N C3 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale2 A OG SER 224 A SER 195 1_555 N C2 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 B NE2 HIS 74 B HIS 57 1_555 P C3 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale4 B OG SER 224 B SER 195 1_555 P C2 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale5 C NE2 HIS 74 D HIS 57 1_555 R C3 0GJ . D 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale6 C OG SER 224 D SER 195 1_555 R C2 0GJ . D 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale7 D NE2 HIS 74 C HIS 57 1_555 S C3 0GJ . C 0GJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 D OG SER 224 C SER 195 1_555 S C2 0GJ . C 0GJ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? metalc ? metalc1 M CA CA . A CA 301 1_555 N OE1 0GJ . A 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc2 O CA CA . B CA 301 1_555 P OE1 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc3 O CA CA . B CA 301 1_555 P OE2 0GJ . B 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc4 Q CA CA . D CA 301 1_555 R OE1 0GJ . D 0GJ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? # _chem_comp.formula 'C14 H28 Cl N6 O5 1' _chem_comp.formula_weight 395.862 _chem_comp.id 0GJ _chem_comp.mon_nstd_flag . _chem_comp.name L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0GJ sing 1 n n N H 0GJ sing 2 n n N H2 0GJ sing 3 n n CA C 0GJ sing 4 n n CA CB 0GJ sing 5 n n CA HA 0GJ sing 6 n n C O 0GJ doub 7 n n C N1 0GJ sing 8 n n CB CG 0GJ sing 9 n n CB HB2 0GJ sing 10 n n CB HB3 0GJ sing 11 n n CG CD 0GJ sing 12 n n CG HG2 0GJ sing 13 n n CG HG3 0GJ sing 14 n n CD OE1 0GJ doub 15 n n CD OE2 0GJ sing 16 n n OE2 HE2 0GJ sing 17 n n N1 CA1 0GJ sing 18 n n N1 H1 0GJ sing 19 n n CA1 C1 0GJ sing 20 n n CA1 HA2 0GJ sing 21 n n CA1 HA3 0GJ sing 22 n n C1 O1 0GJ doub 23 n n C1 N2 0GJ sing 24 n n N2 CA2 0GJ sing 25 n n N2 H3 0GJ sing 26 n n CA2 C2 0GJ sing 27 n n CA2 CB1 0GJ sing 28 n n CA2 HA1 0GJ sing 29 n n C2 O2 0GJ sing 30 n n C2 C3 0GJ sing 31 n n CB1 CG1 0GJ sing 32 n n CB1 HB21 0GJ sing 33 n n CB1 HB31 0GJ sing 34 n n CG1 CD1 0GJ sing 35 n n CG1 HG21 0GJ sing 36 n n CG1 HG31 0GJ sing 37 n n CD1 NE 0GJ sing 38 n n CD1 HD2 0GJ sing 39 n n CD1 HD3 0GJ sing 40 n n NE CZ 0GJ sing 41 n n NE HE 0GJ sing 42 n n CZ NH1 0GJ sing 43 n n CZ NH2 0GJ doub 44 n n NH1 HH11 0GJ sing 45 n n NH1 HH12 0GJ sing 46 n n NH2 HH21 0GJ sing 47 n n NH2 HH22 0GJ sing 48 n n C3 H11 0GJ sing 49 n n C3 H21 0GJ sing 50 n n CL C3 0GJ sing 51 n n C2 H27 0GJ sing 52 n n O2 H28 0GJ sing 53 n n # _atom_sites.entry_id 6VVU _atom_sites.fract_transf_matrix[1][1] 0.011164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004056 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 CA A 1 301 3 CA CA . N 5 0GJ A 1 302 1 0GJ 0GJ . O 4 CA B 1 301 1 CA CA . P 5 0GJ B 1 302 1 0GJ 0GJ . Q 4 CA D 1 301 2 CA CA . R 5 0GJ D 1 302 1 0GJ 0GJ . S 5 0GJ C 1 301 1 0GJ 0GJ . T 6 HOH D 1 401 5 HOH HOH . U 6 HOH K 1 301 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0GJ . . . R 5 37.494 17.652 61.89 1 47.2 ? N 0GJ 302 D 1 HETATM 2 C CA 0GJ . . . R 5 37.698 16.368 62.44 1 50.69 ? CA 0GJ 302 D 1 HETATM 3 C C 0GJ . . . R 5 38.944 16.344 63.33 1 51.25 ? C 0GJ 302 D 1 HETATM 4 O O 0GJ . . . R 5 40.063 16.509 62.83 1 53.43 ? O 0GJ 302 D 1 HETATM 5 C CB 0GJ . . . R 5 37.821 15.332 61.338 1 56.02 ? CB 0GJ 302 D 1 HETATM 6 C CG 0GJ . . . R 5 38.169 13.914 61.803 1 62.54 ? CG 0GJ 302 D 1 HETATM 7 C CD 0GJ . . . R 5 38.44 12.913 60.703 1 70.81 ? CD 0GJ 302 D 1 HETATM 8 O OE1 0GJ . . . R 5 38.447 13.264 59.471 1 73.31 ? OE1 0GJ 302 D 1 HETATM 9 O OE2 0GJ . . . R 5 38.657 11.705 61.03 1 72.43 ? OE2 0GJ 302 D 1 HETATM 10 N N1 0GJ . . . R 5 38.766 16.048 64.753 1 47.07 ? N1 0GJ 302 D 1 HETATM 11 C CA1 0GJ . . . R 5 39.973 15.957 65.562 1 43.75 ? CA1 0GJ 302 D 1 HETATM 12 C C1 0GJ . . . R 5 40.956 14.841 65.08 1 42.01 ? C1 0GJ 302 D 1 HETATM 13 O O1 0GJ . . . R 5 40.565 13.911 64.37 1 37.13 ? O1 0GJ 302 D 1 HETATM 14 N N2 0GJ . . . R 5 42.314 14.941 65.521 1 44.94 ? N2 0GJ 302 D 1 HETATM 15 C CA2 0GJ . . . R 5 43.306 13.95 65.209 1 47.03 ? CA2 0GJ 302 D 1 HETATM 16 C C2 0GJ . . . R 5 43.874 13.367 66.521 1 46.42 ? C2 0GJ 302 D 1 HETATM 17 O O2 0GJ . . . R 5 44.54 12.027 66.293 1 42.12 ? O2 0GJ 302 D 1 HETATM 18 C CB1 0GJ . . . R 5 44.32 14.453 64.204 1 50.73 ? CB1 0GJ 302 D 1 HETATM 19 C CG1 0GJ . . . R 5 44.175 15.88 63.739 1 52.76 ? CG1 0GJ 302 D 1 HETATM 20 C CD1 0GJ . . . R 5 44.122 16.058 62.213 1 53.29 ? CD1 0GJ 302 D 1 HETATM 21 N NE 0GJ . . . R 5 45.244 16.884 61.827 1 55.29 ? NE 0GJ 302 D 1 HETATM 22 C CZ 0GJ . . . R 5 45.373 17.6 60.581 1 58.58 ? CZ 0GJ 302 D 1 HETATM 23 N NH1 0GJ . . . R 5 44.484 17.607 59.641 1 61.45 ? NH1 0GJ 302 D 1 HETATM 24 N NH2 0GJ . . . R 5 46.428 18.265 60.375 1 58.3 ? NH2 0GJ 302 D 1 HETATM 25 C C3 0GJ . . . R 5 42.704 13.185 67.56 1 50.59 ? C3 0GJ 302 D 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #