data_6VW9 # _model_server_result.job_id XNiL_A9iP9ODux5LYjOBJA _model_server_result.datetime_utc '2025-03-03 03:03:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1102}' # _entry.id 6VW9 # _exptl.entry_id 6VW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.174 _cell.angle_gamma 90 _cell.entry_id 6VW9 _cell.length_a 104.32 _cell.length_b 65.546 _cell.length_c 56.523 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 97.261237 0 56.080508 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6VW9 _atom_sites.fract_transf_matrix[1][1] 0.009586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001207 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 P33 A 1 1101 1 P33 P33 . D 4 GOL A 1 1102 1 GOL GOL . E 4 GOL A 1 1103 2 GOL GOL . F 4 GOL A 1 1104 3 GOL GOL . G 5 HOH A 1 1201 47 HOH HOH . G 5 HOH A 2 1202 52 HOH HOH . G 5 HOH A 3 1203 29 HOH HOH . G 5 HOH A 4 1204 35 HOH HOH . G 5 HOH A 5 1205 39 HOH HOH . G 5 HOH A 6 1206 20 HOH HOH . G 5 HOH A 7 1207 28 HOH HOH . G 5 HOH A 8 1208 43 HOH HOH . G 5 HOH A 9 1209 45 HOH HOH . G 5 HOH A 10 1210 34 HOH HOH . G 5 HOH A 11 1211 57 HOH HOH . G 5 HOH A 12 1212 6 HOH HOH . G 5 HOH A 13 1213 36 HOH HOH . G 5 HOH A 14 1214 32 HOH HOH . G 5 HOH A 15 1215 23 HOH HOH . G 5 HOH A 16 1216 56 HOH HOH . G 5 HOH A 17 1217 37 HOH HOH . G 5 HOH A 18 1218 49 HOH HOH . G 5 HOH A 19 1219 14 HOH HOH . G 5 HOH A 20 1220 67 HOH HOH . G 5 HOH A 21 1221 30 HOH HOH . G 5 HOH A 22 1222 25 HOH HOH . G 5 HOH A 23 1223 15 HOH HOH . G 5 HOH A 24 1224 2 HOH HOH . G 5 HOH A 25 1225 4 HOH HOH . G 5 HOH A 26 1226 16 HOH HOH . G 5 HOH A 27 1227 19 HOH HOH . G 5 HOH A 28 1228 27 HOH HOH . G 5 HOH A 29 1229 8 HOH HOH . G 5 HOH A 30 1230 66 HOH HOH . G 5 HOH A 31 1231 3 HOH HOH . G 5 HOH A 32 1232 1 HOH HOH . G 5 HOH A 33 1233 46 HOH HOH . G 5 HOH A 34 1234 21 HOH HOH . G 5 HOH A 35 1235 7 HOH HOH . G 5 HOH A 36 1236 31 HOH HOH . G 5 HOH A 37 1237 13 HOH HOH . G 5 HOH A 38 1238 18 HOH HOH . G 5 HOH A 39 1239 41 HOH HOH . G 5 HOH A 40 1240 33 HOH HOH . G 5 HOH A 41 1241 5 HOH HOH . G 5 HOH A 42 1242 40 HOH HOH . G 5 HOH A 43 1243 38 HOH HOH . G 5 HOH A 44 1244 24 HOH HOH . G 5 HOH A 45 1245 55 HOH HOH . G 5 HOH A 46 1246 53 HOH HOH . G 5 HOH A 47 1247 42 HOH HOH . G 5 HOH A 48 1248 12 HOH HOH . G 5 HOH A 49 1249 50 HOH HOH . G 5 HOH A 50 1250 51 HOH HOH . G 5 HOH A 51 1251 64 HOH HOH . G 5 HOH A 52 1252 62 HOH HOH . G 5 HOH A 53 1253 44 HOH HOH . G 5 HOH A 54 1254 48 HOH HOH . G 5 HOH A 55 1255 54 HOH HOH . G 5 HOH A 56 1256 63 HOH HOH . G 5 HOH A 57 1257 65 HOH HOH . H 5 HOH B 1 1101 59 HOH HOH . H 5 HOH B 2 1102 26 HOH HOH . H 5 HOH B 3 1103 17 HOH HOH . H 5 HOH B 4 1104 22 HOH HOH . H 5 HOH B 5 1105 58 HOH HOH . H 5 HOH B 6 1106 10 HOH HOH . H 5 HOH B 7 1107 9 HOH HOH . H 5 HOH B 8 1108 11 HOH HOH . H 5 HOH B 9 1109 60 HOH HOH . H 5 HOH B 10 1110 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 36.342 41.582 -6.208 1 84.3 ? C1 GOL 1102 A 1 HETATM 2 O O1 GOL . . . D 4 35.877 40.73 -5.204 1 87.07 ? O1 GOL 1102 A 1 HETATM 3 C C2 GOL . . . D 4 37.382 42.55 -5.583 1 78.62 ? C2 GOL 1102 A 1 HETATM 4 O O2 GOL . . . D 4 38.07 41.99 -4.509 1 81.97 ? O2 GOL 1102 A 1 HETATM 5 C C3 GOL . . . D 4 36.605 43.816 -5.188 1 78.39 ? C3 GOL 1102 A 1 HETATM 6 O O3 GOL . . . D 4 35.801 44.152 -6.291 1 78.43 ? O3 GOL 1102 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #