data_6VWE
#
_model_server_result.job_id            H5KocZt_6BIcYynglmVbXw 
_model_server_result.datetime_utc      '2024-12-21 16:35:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vwe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6VWE 
#
_exptl.entry_id    6VWE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              913.81 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            bis[diethyl(methyl)-lambda~5~-phosphanyl]{bis[{[(2-{[2-(2,5-dioxopyrrolidin-1-yl)ethyl]amino}-2-oxoethyl)amino]methyl}(diethyl)-lambda~5~-phosphanyl]}rhodium 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.92 
_cell.angle_gamma         90 
_cell.entry_id            6VWE 
_cell.length_a            101.855 
_cell.length_b            35.619 
_cell.length_c            71.651 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VWE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B 2 1 
A,B,C,D 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             92 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              89 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C25 
_struct_conn.ptnr2_label_comp_id            JY1 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             JY1 
_struct_conn.ptnr2_auth_seq_id              201 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.767 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C36 H74 N6 O6 P4 Rh' 
_chem_comp.formula_weight    913.81 
_chem_comp.id                JY1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              bis[diethyl(methyl)-lambda~5~-phosphanyl]{bis[{[(2-{[2-(2,5-dioxopyrrolidin-1-yl)ethyl]amino}-2-oxoethyl)amino]methyl}(diethyl)-lambda~5~-phosphanyl]}rhodium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C12 JY1 sing 173 n n 
C11 P10 JY1 sing 174 n n 
C13 C14 JY1 sing 175 n n 
C13 P10 JY1 sing 176 n n 
C15 C16 JY1 sing 177 n n 
C03 C04 JY1 sing 178 n n 
C03 P02 JY1 sing 179 n n 
C05 C06 JY1 sing 180 n n 
C05 P02 JY1 sing 181 n n 
C07 P02 JY1 sing 182 n n 
C09 P10 JY1 sing 183 n n 
C16 N18 JY1 sing 184 n n 
C16 O17 JY1 doub 185 n n 
C19 C20 JY1 sing 186 n n 
C19 N18 JY1 sing 187 n n 
C20 N21 JY1 sing 188 n n 
C22 C24 JY1 sing 189 n n 
C22 N21 JY1 sing 190 n n 
C22 O23 JY1 doub 191 n n 
C24 C25 JY1 sing 192 n n 
C25 C26 JY1 sing 193 n n 
C26 N21 JY1 sing 194 n n 
C26 O27 JY1 doub 195 n n 
C29 C30 JY1 sing 196 n n 
C29 P28 JY1 sing 197 n n 
C31 C32 JY1 sing 198 n n 
C31 P28 JY1 sing 199 n n 
C33 P28 JY1 sing 200 n n 
C35 P36 JY1 sing 201 n n 
C37 C38 JY1 sing 202 n n 
C37 P36 JY1 sing 203 n n 
C39 C40 JY1 sing 204 n n 
C39 P36 JY1 sing 205 n n 
C41 C42 JY1 sing 206 n n 
C42 N44 JY1 sing 207 n n 
C42 O43 JY1 doub 208 n n 
C45 C46 JY1 sing 209 n n 
C45 N44 JY1 sing 210 n n 
C46 N47 JY1 sing 211 n n 
C48 C50 JY1 sing 212 n n 
C48 N47 JY1 sing 213 n n 
C48 O49 JY1 doub 214 n n 
C50 C51 JY1 sing 215 n n 
C51 C52 JY1 sing 216 n n 
C52 N47 JY1 sing 217 n n 
C52 O53 JY1 doub 218 n n 
P02 RH01 JY1 sing 219 n n 
P10 RH01 JY1 sing 220 n n 
P28 RH01 JY1 sing 221 n n 
P36 RH01 JY1 sing 222 n n 
C09 N08 JY1 sing 223 n n 
N08 C15 JY1 sing 224 n n 
C33 N34 JY1 sing 225 n n 
N34 C41 JY1 sing 226 n n 
C11 H1 JY1 sing 227 n n 
C11 H2 JY1 sing 228 n n 
C12 H3 JY1 sing 229 n n 
C12 H4 JY1 sing 230 n n 
C12 H5 JY1 sing 231 n n 
C13 H6 JY1 sing 232 n n 
C13 H7 JY1 sing 233 n n 
C14 H8 JY1 sing 234 n n 
C14 H9 JY1 sing 235 n n 
C14 H10 JY1 sing 236 n n 
C15 H11 JY1 sing 237 n n 
C15 H12 JY1 sing 238 n n 
C03 H13 JY1 sing 239 n n 
C03 H14 JY1 sing 240 n n 
C04 H15 JY1 sing 241 n n 
C04 H16 JY1 sing 242 n n 
C04 H17 JY1 sing 243 n n 
C05 H18 JY1 sing 244 n n 
C05 H19 JY1 sing 245 n n 
C06 H20 JY1 sing 246 n n 
C06 H21 JY1 sing 247 n n 
C06 H22 JY1 sing 248 n n 
C07 H23 JY1 sing 249 n n 
C07 H24 JY1 sing 250 n n 
C07 H25 JY1 sing 251 n n 
C09 H26 JY1 sing 252 n n 
C09 H27 JY1 sing 253 n n 
C19 H28 JY1 sing 254 n n 
C19 H29 JY1 sing 255 n n 
C20 H30 JY1 sing 256 n n 
C20 H31 JY1 sing 257 n n 
C24 H32 JY1 sing 258 n n 
C24 H33 JY1 sing 259 n n 
C25 H34 JY1 sing 260 n n 
C25 H35 JY1 sing 261 n n 
C29 H36 JY1 sing 262 n n 
C29 H37 JY1 sing 263 n n 
C30 H38 JY1 sing 264 n n 
C30 H39 JY1 sing 265 n n 
C30 H40 JY1 sing 266 n n 
C31 H41 JY1 sing 267 n n 
C31 H42 JY1 sing 268 n n 
C32 H43 JY1 sing 269 n n 
C32 H44 JY1 sing 270 n n 
C32 H45 JY1 sing 271 n n 
C33 H46 JY1 sing 272 n n 
C33 H47 JY1 sing 273 n n 
C35 H48 JY1 sing 274 n n 
C35 H49 JY1 sing 275 n n 
C35 H50 JY1 sing 276 n n 
C37 H51 JY1 sing 277 n n 
C37 H52 JY1 sing 278 n n 
C38 H53 JY1 sing 279 n n 
C38 H54 JY1 sing 280 n n 
C38 H55 JY1 sing 281 n n 
C39 H56 JY1 sing 282 n n 
C39 H57 JY1 sing 283 n n 
C40 H58 JY1 sing 284 n n 
C40 H59 JY1 sing 285 n n 
C40 H60 JY1 sing 286 n n 
C41 H61 JY1 sing 287 n n 
C41 H62 JY1 sing 288 n n 
C45 H63 JY1 sing 289 n n 
C45 H64 JY1 sing 290 n n 
C46 H65 JY1 sing 291 n n 
C46 H66 JY1 sing 292 n n 
C50 H67 JY1 sing 293 n n 
C50 H68 JY1 sing 294 n n 
C51 H69 JY1 sing 295 n n 
C51 H70 JY1 sing 296 n n 
N08 H71 JY1 sing 297 n n 
N18 H73 JY1 sing 298 n n 
N34 H74 JY1 sing 299 n n 
N44 H76 JY1 sing 300 n n 
#
_atom_sites.entry_id                     6VWE 
_atom_sites.fract_transf_matrix[1][1]    0.009818 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001019 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028075 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014031 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 JY1 A 1 201 201 JY1 JY1 . 
D 3 HOH A 1 301 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 JY1 . . . C 2 8.646 -7.098 21.496 1 142.51 ? C11 JY1 201 A 1 
HETATM 2 C C12 JY1 . . . C 2 8.535 -8.377 20.66 1 127.56 ? C12 JY1 201 A 1 
HETATM 3 C C13 JY1 . . . C 2 10.909 -6.66 22.783 1 158.61 ? C13 JY1 201 A 1 
HETATM 4 C C14 JY1 . . . C 2 11.491 -8.053 22.506 1 155.64 ? C14 JY1 201 A 1 
HETATM 5 C C15 JY1 . . . C 2 12.484 -6.156 18.341 1 155.03 ? C15 JY1 201 A 1 
HETATM 6 C C03 JY1 . . . C 2 7.674 -5.725 18.508 1 157.53 ? C03 JY1 201 A 1 
HETATM 7 C C04 JY1 . . . C 2 8.167 -6.17 17.127 1 150.59 ? C04 JY1 201 A 1 
HETATM 8 C C05 JY1 . . . C 2 7.03 -2.632 19.175 1 160.76 ? C05 JY1 201 A 1 
HETATM 9 C C06 JY1 . . . C 2 7.889 -1.418 19.478 1 159.79 ? C06 JY1 201 A 1 
HETATM 10 C C07 JY1 . . . C 2 9.863 -3.434 18.004 1 151.55 ? C07 JY1 201 A 1 
HETATM 11 C C09 JY1 . . . C 2 10.652 -7.063 19.637 1 158.01 ? C09 JY1 201 A 1 
HETATM 12 C C16 JY1 . . . C 2 12.532 -6.223 16.845 1 165.38 ? C16 JY1 201 A 1 
HETATM 13 C C19 JY1 . . . C 2 13.251 -5.306 14.702 1 159.44 ? C19 JY1 201 A 1 
HETATM 14 C C20 JY1 . . . C 2 14.519 -4.602 14.204 1 147.75 ? C20 JY1 201 A 1 
HETATM 15 C C22 JY1 . . . C 2 15.607 -6.799 14.185 1 132.67 ? C22 JY1 201 A 1 
HETATM 16 C C24 JY1 . . . C 2 16.792 -7.409 14.876 1 115.93 ? C24 JY1 201 A 1 
HETATM 17 C C25 JY1 . . . C 2 17.798 -6.228 14.864 1 108.42 ? C25 JY1 201 A 1 
HETATM 18 C C26 JY1 . . . C 2 16.87 -5.022 14.819 1 119.88 ? C26 JY1 201 A 1 
HETATM 19 C C29 JY1 . . . C 2 11.956 -2.133 20.231 1 126.57 ? C29 JY1 201 A 1 
HETATM 20 C C30 JY1 . . . C 2 12.003 -0.721 19.648 1 130.71 ? C30 JY1 201 A 1 
HETATM 21 C C31 JY1 . . . C 2 11.583 -3.182 22.477 1 132.88 ? C31 JY1 201 A 1 
HETATM 22 C C32 JY1 . . . C 2 12.517 -2.047 22.881 1 135.38 ? C32 JY1 201 A 1 
HETATM 23 C C33 JY1 . . . C 2 9.925 -1.038 22.486 1 118.73 ? C33 JY1 201 A 1 
HETATM 24 C C35 JY1 . . . C 2 8.671 -3.822 23.995 1 115.53 ? C35 JY1 201 A 1 
HETATM 25 C C37 JY1 . . . C 2 6.018 -4.741 21.537 1 138.34 ? C37 JY1 201 A 1 
HETATM 26 C C38 JY1 . . . C 2 4.665 -4.717 22.262 1 129.9 ? C38 JY1 201 A 1 
HETATM 27 C C39 JY1 . . . C 2 6.343 -2.798 23.339 1 130.1 ? C39 JY1 201 A 1 
HETATM 28 C C40 JY1 . . . C 2 6.426 -1.472 22.572 1 120.6 ? C40 JY1 201 A 1 
HETATM 29 C C41 JY1 . . . C 2 10.385 1.26 22.072 1 134.35 ? C41 JY1 201 A 1 
HETATM 30 C C42 JY1 . . . C 2 9.513 2.075 22.98 1 151.66 ? C42 JY1 201 A 1 
HETATM 31 C C45 JY1 . . . C 2 9.205 4.193 24.263 1 161.55 ? C45 JY1 201 A 1 
HETATM 32 C C46 JY1 . . . C 2 8.887 3.562 25.624 1 170.79 ? C46 JY1 201 A 1 
HETATM 33 C C48 JY1 . . . C 2 6.5 3.193 26.096 1 173.08 ? C48 JY1 201 A 1 
HETATM 34 C C50 JY1 . . . C 2 5.955 3.223 27.494 1 162.75 ? C50 JY1 201 A 1 
HETATM 35 C C51 JY1 . . . C 2 6.285 4.677 27.886 1 163.65 ? C51 JY1 201 A 1 
HETATM 36 C C52 JY1 . . . C 2 7.505 4.969 27.039 1 172.03 ? C52 JY1 201 A 1 
HETATM 37 N N08 JY1 . . . C 2 11.05 -6.103 18.618 1 151.83 ? N08 JY1 201 A 1 
HETATM 38 N N18 JY1 . . . C 2 13.204 -5.275 16.168 1 167.8 ? N18 JY1 201 A 1 
HETATM 39 N N21 JY1 . . . C 2 15.658 -5.484 14.457 1 137.01 ? N21 JY1 201 A 1 
HETATM 40 N N34 JY1 . . . C 2 9.565 0.12 21.675 1 118.57 ? N34 JY1 201 A 1 
HETATM 41 N N44 JY1 . . . C 2 9.961 3.286 23.392 1 158.08 ? N44 JY1 201 A 1 
HETATM 42 N N47 JY1 . . . C 2 7.567 4.022 26.088 1 175.28 ? N47 JY1 201 A 1 
HETATM 43 O O17 JY1 . . . C 2 11.937 -7.115 16.268 1 168.62 ? O17 JY1 201 A 1 
HETATM 44 O O23 JY1 . . . C 2 15.114 -7.295 13.188 1 138.36 ? O23 JY1 201 A 1 
HETATM 45 O O27 JY1 . . . C 2 17.187 -3.843 14.895 1 104.36 ? O27 JY1 201 A 1 
HETATM 46 O O43 JY1 . . . C 2 8.431 1.612 23.301 1 156.17 ? O43 JY1 201 A 1 
HETATM 47 O O49 JY1 . . . C 2 5.829 2.874 25.133 1 176.49 ? O49 JY1 201 A 1 
HETATM 48 O O53 JY1 . . . C 2 8.479 5.577 27.442 1 174.06 ? O53 JY1 201 A 1 
HETATM 49 P P02 JY1 . . . C 2 8.268 -3.978 18.813 1 161.68 ? P02 JY1 201 A 1 
HETATM 50 P P10 JY1 . . . C 2 10.2 -6.074 21.157 1 157.79 ? P10 JY1 201 A 1 
HETATM 51 P P28 JY1 . . . C 2 10.421 -2.368 21.281 1 124.16 ? P28 JY1 201 A 1 
HETATM 52 P P36 JY1 . . . C 2 7.412 -4.219 22.688 1 136.07 ? P36 JY1 201 A 1 
HETATM 53 RH RH01 JY1 . . . C 2 9.009 -4.138 21.003 1 227.77 ? RH01 JY1 201 A 1 
#
_model_server_stats.io_time_ms              130 
_model_server_stats.parse_time_ms           82 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           1023 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           53 
#