data_6VWF # _model_server_result.job_id Js5BJe_WbA8fdK8t7WTzEw _model_server_result.datetime_utc '2025-05-17 13:04:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6VWF # _exptl.entry_id 6VWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VWF _cell.length_a 158.148 _cell.length_b 163.466 _cell.length_c 84.341 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 79.074 81.733 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 6VWF _atom_sites.fract_transf_matrix[1][1] 0.006323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 501 581 NAD NAD . D 2 NAD B 1 501 581 NAD NAD . E 3 HOH A 1 601 154 HOH HOH . E 3 HOH A 2 602 24 HOH HOH . E 3 HOH A 3 603 45 HOH HOH . E 3 HOH A 4 604 77 HOH HOH . E 3 HOH A 5 605 36 HOH HOH . E 3 HOH A 6 606 26 HOH HOH . E 3 HOH A 7 607 155 HOH HOH . E 3 HOH A 8 608 71 HOH HOH . E 3 HOH A 9 609 158 HOH HOH . E 3 HOH A 10 610 14 HOH HOH . F 3 HOH B 1 601 25 HOH HOH . F 3 HOH B 2 602 20 HOH HOH . F 3 HOH B 3 603 13 HOH HOH . F 3 HOH B 4 604 19 HOH HOH . F 3 HOH B 5 605 156 HOH HOH . F 3 HOH B 6 606 10 HOH HOH . F 3 HOH B 7 607 3 HOH HOH . F 3 HOH B 8 608 1 HOH HOH . F 3 HOH B 9 609 51 HOH HOH . F 3 HOH B 10 610 104 HOH HOH . F 3 HOH B 11 611 72 HOH HOH . F 3 HOH B 12 612 92 HOH HOH . F 3 HOH B 13 613 108 HOH HOH . F 3 HOH B 14 614 53 HOH HOH . F 3 HOH B 15 615 157 HOH HOH . F 3 HOH B 16 616 112 HOH HOH . F 3 HOH B 17 617 35 HOH HOH . F 3 HOH B 18 618 5 HOH HOH . F 3 HOH B 19 619 52 HOH HOH . F 3 HOH B 20 620 38 HOH HOH . F 3 HOH B 21 621 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 36.057 58.899 68.742 1 83.14 ? PA NAD 501 A 1 HETATM 2 O O1A NAD . . . C 2 37.515 59.169 68.024 1 82.8 ? O1A NAD 501 A 1 HETATM 3 O O2A NAD . . . C 2 36.27 58.289 70.099 1 90.62 -1 O2A NAD 501 A 1 HETATM 4 O O5B NAD . . . C 2 35.124 57.856 67.82 1 70.25 ? O5B NAD 501 A 1 HETATM 5 C C5B NAD . . . C 2 34.463 56.781 68.496 1 62.3 ? C5B NAD 501 A 1 HETATM 6 C C4B NAD . . . C 2 33.094 56.438 67.814 1 56.66 ? C4B NAD 501 A 1 HETATM 7 O O4B NAD . . . C 2 32.557 55.024 68.373 1 61.6 ? O4B NAD 501 A 1 HETATM 8 C C3B NAD . . . C 2 32.187 57.281 68.175 1 56.89 ? C3B NAD 501 A 1 HETATM 9 O O3B NAD . . . C 2 31.003 57.177 67.256 1 54.45 ? O3B NAD 501 A 1 HETATM 10 C C2B NAD . . . C 2 31.809 56.791 69.602 1 59.82 ? C2B NAD 501 A 1 HETATM 11 O O2B NAD . . . C 2 30.534 57.151 69.932 1 54.01 ? O2B NAD 501 A 1 HETATM 12 C C1B NAD . . . C 2 31.939 55.273 69.512 1 58.16 ? C1B NAD 501 A 1 HETATM 13 N N9A NAD . . . C 2 32.703 54.748 70.641 1 49.61 ? N9A NAD 501 A 1 HETATM 14 C C8A NAD . . . C 2 33.539 55.184 71.579 1 51.64 ? C8A NAD 501 A 1 HETATM 15 N N7A NAD . . . C 2 33.867 54.107 72.332 1 51.52 ? N7A NAD 501 A 1 HETATM 16 C C5A NAD . . . C 2 33.22 53.033 71.834 1 53.61 ? C5A NAD 501 A 1 HETATM 17 C C6A NAD . . . C 2 33.21 51.697 72.231 1 53.46 ? C6A NAD 501 A 1 HETATM 18 N N6A NAD . . . C 2 34.035 51.301 73.407 1 57.21 ? N6A NAD 501 A 1 HETATM 19 N N1A NAD . . . C 2 32.48 50.812 71.568 1 50.52 ? N1A NAD 501 A 1 HETATM 20 C C2A NAD . . . C 2 31.725 51.214 70.477 1 37.28 ? C2A NAD 501 A 1 HETATM 21 N N3A NAD . . . C 2 31.732 52.508 70.089 1 37.26 ? N3A NAD 501 A 1 HETATM 22 C C4A NAD . . . C 2 32.491 53.418 70.782 1 47.69 ? C4A NAD 501 A 1 HETATM 23 O O3 NAD . . . C 2 35.337 60.214 68.884 1 82.81 ? O3 NAD 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #