data_6VX2 # _model_server_result.job_id RvvQ9Lpv14-j6SFGCLDnLg _model_server_result.datetime_utc '2025-01-18 05:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vx2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 6VX2 # _exptl.entry_id 6VX2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.195 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5-methyl-1-benzofuran-3-yl)acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VX2 _cell.length_a 46.288 _cell.length_b 46.288 _cell.length_c 140.096 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VX2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 15 A ASP 64 1_555 A N CSO 16 A CSO 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CSO 16 A CSO 65 1_555 A N THR 17 A THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C ALA 80 A ALA 129 1_555 A N CSD 81 A CSD 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C CSD 81 A CSD 130 1_555 A N GLU 82 A GLU 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C11 H10 O3' _chem_comp.formula_weight 190.195 _chem_comp.id RQG _chem_comp.mon_nstd_flag . _chem_comp.name '(5-methyl-1-benzofuran-3-yl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O06 C07 RQG sing 306 n y O06 C05 RQG sing 307 n y C07 C08 RQG doub 308 n y O12 C10 RQG doub 309 n n C05 C04 RQG doub 310 n y C05 C13 RQG sing 311 n y C08 C09 RQG sing 312 n n C08 C13 RQG sing 313 n y C04 C03 RQG sing 314 n y C10 C09 RQG sing 315 n n C10 O11 RQG sing 316 n n C13 C14 RQG doub 317 n y C03 C02 RQG doub 318 n y C14 C02 RQG sing 319 n y C02 C01 RQG sing 320 n n C01 H1 RQG sing 321 n n C01 H2 RQG sing 322 n n C01 H3 RQG sing 323 n n C03 H4 RQG sing 324 n n C04 H5 RQG sing 325 n n C07 H6 RQG sing 326 n n C09 H7 RQG sing 327 n n C09 H8 RQG sing 328 n n O11 H9 RQG sing 329 n n C14 H10 RQG sing 330 n n # _atom_sites.entry_id 6VX2 _atom_sites.fract_transf_matrix[1][1] 0.021604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 301 1 IOD IOD . C 2 IOD A 1 302 4 IOD IOD . D 2 IOD A 1 303 5 IOD IOD . E 2 IOD A 1 304 7 IOD IOD . F 2 IOD A 1 305 8 IOD IOD . G 2 IOD A 1 306 10 IOD IOD . H 2 IOD A 1 307 11 IOD IOD . I 3 RQG A 1 308 1 RQG LIG . J 4 SO4 A 1 309 1 SO4 SO4 . K 4 SO4 A 1 310 2 SO4 SO4 . L 5 HOH A 1 401 1 HOH HOH . L 5 HOH A 2 402 3 HOH HOH . L 5 HOH A 3 403 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RQG . . . I 3 16.206 24.357 12.55 1 44.24 ? C10 RQG 308 A 1 HETATM 2 C C13 RQG . . . I 3 15.432 21.221 12.818 1 35.76 ? C13 RQG 308 A 1 HETATM 3 C C01 RQG . . . I 3 12.738 20.809 15.46 1 34.93 ? C01 RQG 308 A 1 HETATM 4 C C02 RQG . . . I 3 13.621 20.552 14.262 1 32.94 ? C02 RQG 308 A 1 HETATM 5 C C03 RQG . . . I 3 13.414 19.415 13.484 1 32.31 ? C03 RQG 308 A 1 HETATM 6 C C04 RQG . . . I 3 14.215 19.181 12.373 1 35.53 ? C04 RQG 308 A 1 HETATM 7 C C05 RQG . . . I 3 15.234 20.092 12.038 1 36.44 ? C05 RQG 308 A 1 HETATM 8 O O06 RQG . . . I 3 16.137 20.089 11.048 1 37.8 ? O06 RQG 308 A 1 HETATM 9 C C07 RQG . . . I 3 16.931 21.134 11.113 1 37.03 ? C07 RQG 308 A 1 HETATM 10 C C08 RQG . . . I 3 16.548 21.916 12.219 1 38.3 ? C08 RQG 308 A 1 HETATM 11 C C09 RQG . . . I 3 17.17 23.209 12.688 1 40.38 ? C09 RQG 308 A 1 HETATM 12 O O11 RQG . . . I 3 15.539 24.735 13.544 1 47.04 ? O11 RQG 308 A 1 HETATM 13 O O12 RQG . . . I 3 16.073 24.925 11.437 1 48.38 ? O12 RQG 308 A 1 HETATM 14 C C14 RQG . . . I 3 14.624 21.451 13.936 1 33.62 ? C14 RQG 308 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #