data_6VX3
#
_model_server_result.job_id            UsN5NeR9QE3Yynmkqo3Xsw 
_model_server_result.datetime_utc      '2024-11-21 13:37:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    6VX3 
#
_exptl.entry_id    6VX3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE1 GLN 178 C GLN 178 1_555 E C32 POV . C POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale2 B OE1 GLN 178 A GLN 178 1_555 G C32 POV . A POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale3 C OE1 GLN 178 B GLN 178 1_555 I C32 POV . B POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale4 D OE1 GLN 178 D GLN 178 1_555 K C32 POV . D POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
_atom_sites.entry_id                     6VX3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV C 1 301 1 POV POV . 
F 2 POV C 1 302 2 POV POV . 
G 2 POV A 1 301 3 POV POV . 
H 2 POV A 1 302 4 POV POV . 
I 2 POV B 1 301 5 POV POV . 
J 2 POV B 1 302 6 POV POV . 
K 2 POV D 1 301 7 POV POV . 
L 2 POV D 1 302 8 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . E 2 106.964 158.498 109.329 1 89.9 ? N POV 301 C 1 
HETATM 2 P P POV . . . E 2 110.33 155.603 109.105 1 89.9 ? P POV 301 C 1 
HETATM 3 C C1 POV . . . E 2 109.429 156.055 111.54 1 89.9 ? C1 POV 301 C 1 
HETATM 4 C C2 POV . . . E 2 110.285 155.236 112.497 1 89.9 ? C2 POV 301 C 1 
HETATM 5 C C3 POV . . . E 2 110.206 153.765 112.11 1 89.9 ? C3 POV 301 C 1 
HETATM 6 C C210 POV . . . E 2 113.761 156.279 124.376 1 89.9 ? C210 POV 301 C 1 
HETATM 7 C C310 POV . . . E 2 115.997 152.465 122.496 1 89.9 ? C310 POV 301 C 1 
HETATM 8 C C11 POV . . . E 2 108.136 156.699 108.123 1 89.9 ? C11 POV 301 C 1 
HETATM 9 O O11 POV . . . E 2 110.226 156.492 110.441 1 89.9 ? O11 POV 301 C 1 
HETATM 10 C C211 POV . . . E 2 114.666 156.814 125.461 1 89.9 ? C211 POV 301 C 1 
HETATM 11 C C311 POV . . . E 2 116.825 151.462 123.288 1 89.9 ? C311 POV 301 C 1 
HETATM 12 C C12 POV . . . E 2 108.26 157.824 109.146 1 89.9 ? C12 POV 301 C 1 
HETATM 13 O O12 POV . . . E 2 108.802 155.533 108.605 1 89.9 ? O12 POV 301 C 1 
HETATM 14 C C212 POV . . . E 2 115.292 155.659 126.234 1 89.9 ? C212 POV 301 C 1 
HETATM 15 C C312 POV . . . E 2 116.443 151.483 124.763 1 89.9 ? C312 POV 301 C 1 
HETATM 16 C C13 POV . . . E 2 106.224 158.516 108.06 1 89.9 ? C13 POV 301 C 1 
HETATM 17 O O13 POV . . . E 2 110.764 154.214 109.502 1 89.9 -1 O13 POV 301 C 1 
HETATM 18 C C213 POV . . . E 2 116.603 156.074 126.893 1 89.9 ? C213 POV 301 C 1 
HETATM 19 C C313 POV . . . E 2 117.238 150.452 125.555 1 89.9 ? C313 POV 301 C 1 
HETATM 20 C C14 POV . . . E 2 106.176 157.784 110.343 1 89.9 ? C14 POV 301 C 1 
HETATM 21 O O14 POV . . . E 2 111.126 156.377 108.083 1 89.9 ? O14 POV 301 C 1 
HETATM 22 C C214 POV . . . E 2 116.82 155.324 128.203 1 89.9 ? C214 POV 301 C 1 
HETATM 23 C C314 POV . . . E 2 118.068 149.565 124.637 1 89.9 ? C314 POV 301 C 1 
HETATM 24 C C15 POV . . . E 2 107.189 159.878 109.776 1 89.9 ? C15 POV 301 C 1 
HETATM 25 C C215 POV . . . E 2 117.345 156.261 129.284 1 89.9 ? C215 POV 301 C 1 
HETATM 26 C C315 POV . . . E 2 118.817 148.508 125.436 1 89.9 ? C315 POV 301 C 1 
HETATM 27 C C216 POV . . . E 2 116.819 155.879 130.663 1 89.9 ? C216 POV 301 C 1 
HETATM 28 C C316 POV . . . E 2 117.844 147.556 126.092 1 89.9 ? C316 POV 301 C 1 
HETATM 29 C C217 POV . . . E 2 116.86 157.075 131.609 1 89.9 ? C217 POV 301 C 1 
HETATM 30 C C218 POV . . . E 2 116.8 156.635 133.055 1 89.9 ? C218 POV 301 C 1 
HETATM 31 C C21 POV . . . E 2 110.124 156.71 114.373 1 89.9 ? C21 POV 301 C 1 
HETATM 32 O O21 POV . . . E 2 109.801 155.402 113.828 1 89.9 ? O21 POV 301 C 1 
HETATM 33 C C22 POV . . . E 2 110.171 156.923 115.868 1 89.9 ? C22 POV 301 C 1 
HETATM 34 O O22 POV . . . E 2 110.353 157.63 113.607 1 89.9 ? O22 POV 301 C 1 
HETATM 35 C C23 POV . . . E 2 111.592 156.699 116.373 1 89.9 ? C23 POV 301 C 1 
HETATM 36 C C24 POV . . . E 2 111.664 156.824 117.891 1 89.9 ? C24 POV 301 C 1 
HETATM 37 C C25 POV . . . E 2 112.99 156.295 118.424 1 89.9 ? C25 POV 301 C 1 
HETATM 38 C C26 POV . . . E 2 113.382 157.013 119.708 1 89.9 ? C26 POV 301 C 1 
HETATM 39 C C27 POV . . . E 2 113.7 156.02 120.819 1 89.9 ? C27 POV 301 C 1 
HETATM 40 C C28 POV . . . E 2 112.88 156.309 122.072 1 89.9 ? C28 POV 301 C 1 
HETATM 41 C C29 POV . . . E 2 113.78 156.833 123.167 1 89.9 ? C29 POV 301 C 1 
HETATM 42 C C31 POV . . . E 2 110.915 152.677 114.239 1 89.9 ? C31 POV 301 C 1 
HETATM 43 O O31 POV . . . E 2 111.174 153.029 112.853 1 89.9 ? O31 POV 301 C 1 
HETATM 44 C C32 POV . . . E 2 111.928 151.894 115.035 1 89.9 ? C32 POV 301 C 1 
HETATM 45 O O32 POV . . . E 2 109.866 153.023 114.753 1 89.9 ? O32 POV 301 C 1 
HETATM 46 C C33 POV . . . E 2 111.319 151.542 116.386 1 89.9 ? C33 POV 301 C 1 
HETATM 47 C C34 POV . . . E 2 112.201 152.037 117.523 1 89.9 ? C34 POV 301 C 1 
HETATM 48 C C35 POV . . . E 2 113.379 151.099 117.734 1 89.9 ? C35 POV 301 C 1 
HETATM 49 C C36 POV . . . E 2 113.909 151.232 119.152 1 89.9 ? C36 POV 301 C 1 
HETATM 50 C C37 POV . . . E 2 113.565 152.601 119.717 1 89.9 ? C37 POV 301 C 1 
HETATM 51 C C38 POV . . . E 2 113.852 152.641 121.21 1 89.9 ? C38 POV 301 C 1 
HETATM 52 C C39 POV . . . E 2 115.043 151.753 121.545 1 89.9 ? C39 POV 301 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           52 
#