data_6VX3
#
_model_server_result.job_id            fG4NEKvUobmUjHNK_bqGXg 
_model_server_result.datetime_utc      '2024-11-21 13:54:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    6VX3 
#
_exptl.entry_id    6VX3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE1 GLN 178 C GLN 178 1_555 E C32 POV . C POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale2 B OE1 GLN 178 A GLN 178 1_555 G C32 POV . A POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale3 C OE1 GLN 178 B GLN 178 1_555 I C32 POV . B POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale4 D OE1 GLN 178 D GLN 178 1_555 K C32 POV . D POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
_atom_sites.entry_id                     6VX3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV C 1 301 1 POV POV . 
F 2 POV C 1 302 2 POV POV . 
G 2 POV A 1 301 3 POV POV . 
H 2 POV A 1 302 4 POV POV . 
I 2 POV B 1 301 5 POV POV . 
J 2 POV B 1 302 6 POV POV . 
K 2 POV D 1 301 7 POV POV . 
L 2 POV D 1 302 8 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . G 2 158.457 160.413 109.359 1 89.9 ? N POV 301 A 1 
HETATM 2 P P POV . . . G 2 155.564 157.046 109.131 1 89.9 ? P POV 301 A 1 
HETATM 3 C C1 POV . . . G 2 156.013 157.946 111.567 1 89.9 ? C1 POV 301 A 1 
HETATM 4 C C2 POV . . . G 2 155.193 157.09 112.523 1 89.9 ? C2 POV 301 A 1 
HETATM 5 C C3 POV . . . G 2 153.723 157.168 112.134 1 89.9 ? C3 POV 301 A 1 
HETATM 6 C C210 POV . . . G 2 156.227 153.611 124.402 1 89.9 ? C210 POV 301 A 1 
HETATM 7 C C310 POV . . . G 2 152.416 151.373 122.517 1 89.9 ? C310 POV 301 A 1 
HETATM 8 C C11 POV . . . G 2 156.659 159.241 108.151 1 89.9 ? C11 POV 301 A 1 
HETATM 9 O O11 POV . . . G 2 156.451 157.15 110.468 1 89.9 ? O11 POV 301 A 1 
HETATM 10 C C211 POV . . . G 2 156.762 152.706 125.487 1 89.9 ? C211 POV 301 A 1 
HETATM 11 C C311 POV . . . G 2 151.413 150.544 123.308 1 89.9 ? C311 POV 301 A 1 
HETATM 12 C C12 POV . . . G 2 157.783 159.117 109.175 1 89.9 ? C12 POV 301 A 1 
HETATM 13 O O12 POV . . . G 2 155.493 158.574 108.631 1 89.9 ? O12 POV 301 A 1 
HETATM 14 C C212 POV . . . G 2 155.607 152.079 126.259 1 89.9 ? C212 POV 301 A 1 
HETATM 15 C C312 POV . . . G 2 151.433 150.926 124.783 1 89.9 ? C312 POV 301 A 1 
HETATM 16 C C13 POV . . . G 2 158.475 161.154 108.09 1 89.9 ? C13 POV 301 A 1 
HETATM 17 O O13 POV . . . G 2 154.175 156.611 109.527 1 89.9 ? O13 POV 301 A 1 
HETATM 18 C C213 POV . . . G 2 156.022 150.768 126.918 1 89.9 ? C213 POV 301 A 1 
HETATM 19 C C313 POV . . . G 2 150.401 150.13 125.574 1 89.9 ? C313 POV 301 A 1 
HETATM 20 C C14 POV . . . G 2 157.741 161.201 110.372 1 89.9 ? C14 POV 301 A 1 
HETATM 21 O O14 POV . . . G 2 156.339 156.25 108.109 1 89.9 ? O14 POV 301 A 1 
HETATM 22 C C214 POV . . . G 2 155.271 150.55 128.227 1 89.9 ? C214 POV 301 A 1 
HETATM 23 C C314 POV . . . G 2 149.516 149.3 124.655 1 89.9 ? C314 POV 301 A 1 
HETATM 24 C C15 POV . . . G 2 159.836 160.189 109.807 1 89.9 ? C15 POV 301 A 1 
HETATM 25 C C215 POV . . . G 2 156.207 150.025 129.308 1 89.9 ? C215 POV 301 A 1 
HETATM 26 C C315 POV . . . G 2 148.458 148.55 125.453 1 89.9 ? C315 POV 301 A 1 
HETATM 27 C C216 POV . . . G 2 155.823 150.551 130.687 1 89.9 ? C216 POV 301 A 1 
HETATM 28 C C316 POV . . . G 2 147.505 149.522 126.108 1 89.9 ? C316 POV 301 A 1 
HETATM 29 C C217 POV . . . G 2 157.018 150.51 131.634 1 89.9 ? C217 POV 301 A 1 
HETATM 30 C C218 POV . . . G 2 156.577 150.569 133.08 1 89.9 ? C218 POV 301 A 1 
HETATM 31 C C21 POV . . . G 2 156.666 157.251 114.4 1 89.9 ? C21 POV 301 A 1 
HETATM 32 O O21 POV . . . G 2 155.358 157.573 113.854 1 89.9 ? O21 POV 301 A 1 
HETATM 33 C C22 POV . . . G 2 156.877 157.203 115.895 1 89.9 ? C22 POV 301 A 1 
HETATM 34 O O22 POV . . . G 2 157.586 157.023 113.635 1 89.9 ? O22 POV 301 A 1 
HETATM 35 C C23 POV . . . G 2 156.654 155.782 116.4 1 89.9 ? C23 POV 301 A 1 
HETATM 36 C C24 POV . . . G 2 156.777 155.71 117.918 1 89.9 ? C24 POV 301 A 1 
HETATM 37 C C25 POV . . . G 2 156.248 154.383 118.45 1 89.9 ? C25 POV 301 A 1 
HETATM 38 C C26 POV . . . G 2 156.965 153.991 119.734 1 89.9 ? C26 POV 301 A 1 
HETATM 39 C C27 POV . . . G 2 155.972 153.673 120.844 1 89.9 ? C27 POV 301 A 1 
HETATM 40 C C28 POV . . . G 2 156.259 154.492 122.098 1 89.9 ? C28 POV 301 A 1 
HETATM 41 C C29 POV . . . G 2 156.783 153.592 123.193 1 89.9 ? C29 POV 301 A 1 
HETATM 42 C C31 POV . . . G 2 152.633 156.458 114.262 1 89.9 ? C31 POV 301 A 1 
HETATM 43 O O31 POV . . . G 2 152.987 156.199 112.876 1 89.9 ? O31 POV 301 A 1 
HETATM 44 C C32 POV . . . G 2 151.85 155.444 115.057 1 89.9 ? C32 POV 301 A 1 
HETATM 45 O O32 POV . . . G 2 152.978 157.507 114.777 1 89.9 ? O32 POV 301 A 1 
HETATM 46 C C33 POV . . . G 2 151.496 156.052 116.408 1 89.9 ? C33 POV 301 A 1 
HETATM 47 C C34 POV . . . G 2 151.991 155.17 117.545 1 89.9 ? C34 POV 301 A 1 
HETATM 48 C C35 POV . . . G 2 151.053 153.992 117.755 1 89.9 ? C35 POV 301 A 1 
HETATM 49 C C36 POV . . . G 2 151.185 153.461 119.173 1 89.9 ? C36 POV 301 A 1 
HETATM 50 C C37 POV . . . G 2 152.554 153.806 119.739 1 89.9 ? C37 POV 301 A 1 
HETATM 51 C C38 POV . . . G 2 152.592 153.519 121.232 1 89.9 ? C38 POV 301 A 1 
HETATM 52 C C39 POV . . . G 2 151.705 152.327 121.566 1 89.9 ? C39 POV 301 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           52 
#