data_6VX3
#
_model_server_result.job_id            94FQxWUhZkNbyA9KawyygQ 
_model_server_result.datetime_utc      '2024-10-19 22:24:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    6VX3 
#
_exptl.entry_id    6VX3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE1 GLN 178 C GLN 178 1_555 E C32 POV . C POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale2 B OE1 GLN 178 A GLN 178 1_555 G C32 POV . A POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale3 C OE1 GLN 178 B GLN 178 1_555 I C32 POV . B POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale4 D OE1 GLN 178 D GLN 178 1_555 K C32 POV . D POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
_atom_sites.entry_id                     6VX3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV C 1 301 1 POV POV . 
F 2 POV C 1 302 2 POV POV . 
G 2 POV A 1 301 3 POV POV . 
H 2 POV A 1 302 4 POV POV . 
I 2 POV B 1 301 5 POV POV . 
J 2 POV B 1 302 6 POV POV . 
K 2 POV D 1 301 7 POV POV . 
L 2 POV D 1 302 8 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . I 2 160.371 108.901 109.375 1 89.9 ? N POV 301 B 1 
HETATM 2 P P POV . . . I 2 157.004 111.794 109.145 1 89.9 ? P POV 301 B 1 
HETATM 3 C C1 POV . . . I 2 157.902 111.344 111.582 1 89.9 ? C1 POV 301 B 1 
HETATM 4 C C2 POV . . . I 2 157.045 112.163 112.537 1 89.9 ? C2 POV 301 B 1 
HETATM 5 C C3 POV . . . I 2 157.123 113.634 112.149 1 89.9 ? C3 POV 301 B 1 
HETATM 6 C C210 POV . . . I 2 153.555 111.127 124.413 1 89.9 ? C210 POV 301 B 1 
HETATM 7 C C310 POV . . . I 2 151.32 114.938 122.528 1 89.9 ? C310 POV 301 B 1 
HETATM 8 C C11 POV . . . I 2 159.199 110.698 108.167 1 89.9 ? C11 POV 301 B 1 
HETATM 9 O O11 POV . . . I 2 157.107 110.906 110.482 1 89.9 ? O11 POV 301 B 1 
HETATM 10 C C211 POV . . . I 2 152.65 110.592 125.497 1 89.9 ? C211 POV 301 B 1 
HETATM 11 C C311 POV . . . I 2 150.49 115.941 123.318 1 89.9 ? C311 POV 301 B 1 
HETATM 12 C C12 POV . . . I 2 159.075 109.574 109.19 1 89.9 ? C12 POV 301 B 1 
HETATM 13 O O12 POV . . . I 2 158.532 111.864 108.647 1 89.9 ? O12 POV 301 B 1 
HETATM 14 C C212 POV . . . I 2 152.022 111.747 126.269 1 89.9 ? C212 POV 301 B 1 
HETATM 15 C C312 POV . . . I 2 150.87 115.921 124.794 1 89.9 ? C312 POV 301 B 1 
HETATM 16 C C13 POV . . . I 2 161.113 108.882 108.107 1 89.9 ? C13 POV 301 B 1 
HETATM 17 O O13 POV . . . I 2 156.569 113.183 109.541 1 89.9 ? O13 POV 301 B 1 
HETATM 18 C C213 POV . . . I 2 150.71 111.332 126.927 1 89.9 ? C213 POV 301 B 1 
HETATM 19 C C313 POV . . . I 2 150.074 116.953 125.584 1 89.9 ? C313 POV 301 B 1 
HETATM 20 C C14 POV . . . I 2 161.157 109.616 110.39 1 89.9 ? C14 POV 301 B 1 
HETATM 21 O O14 POV . . . I 2 156.209 111.019 108.123 1 89.9 ? O14 POV 301 B 1 
HETATM 22 C C214 POV . . . I 2 150.492 112.083 128.236 1 89.9 ? C214 POV 301 B 1 
HETATM 23 C C314 POV . . . I 2 149.245 117.838 124.664 1 89.9 ? C314 POV 301 B 1 
HETATM 24 C C15 POV . . . I 2 160.146 107.521 109.823 1 89.9 ? C15 POV 301 B 1 
HETATM 25 C C215 POV . . . I 2 149.966 111.146 129.317 1 89.9 ? C215 POV 301 B 1 
HETATM 26 C C315 POV . . . I 2 148.494 118.896 125.462 1 89.9 ? C315 POV 301 B 1 
HETATM 27 C C216 POV . . . I 2 150.49 111.529 130.696 1 89.9 ? C216 POV 301 B 1 
HETATM 28 C C316 POV . . . I 2 149.466 119.849 126.118 1 89.9 ? C316 POV 301 B 1 
HETATM 29 C C217 POV . . . I 2 150.449 110.334 131.643 1 89.9 ? C217 POV 301 B 1 
HETATM 30 C C218 POV . . . I 2 150.507 110.775 133.089 1 89.9 ? C218 POV 301 B 1 
HETATM 31 C C21 POV . . . I 2 157.204 110.691 114.414 1 89.9 ? C21 POV 301 B 1 
HETATM 32 O O21 POV . . . I 2 157.527 111.999 113.869 1 89.9 ? O21 POV 301 B 1 
HETATM 33 C C22 POV . . . I 2 157.156 110.479 115.91 1 89.9 ? C22 POV 301 B 1 
HETATM 34 O O22 POV . . . I 2 156.977 109.77 113.649 1 89.9 ? O22 POV 301 B 1 
HETATM 35 C C23 POV . . . I 2 155.734 110.702 116.413 1 89.9 ? C23 POV 301 B 1 
HETATM 36 C C24 POV . . . I 2 155.66 110.578 117.931 1 89.9 ? C24 POV 301 B 1 
HETATM 37 C C25 POV . . . I 2 154.333 111.107 118.462 1 89.9 ? C25 POV 301 B 1 
HETATM 38 C C26 POV . . . I 2 153.94 110.39 119.746 1 89.9 ? C26 POV 301 B 1 
HETATM 39 C C27 POV . . . I 2 153.62 111.383 120.856 1 89.9 ? C27 POV 301 B 1 
HETATM 40 C C28 POV . . . I 2 154.439 111.096 122.11 1 89.9 ? C28 POV 301 B 1 
HETATM 41 C C29 POV . . . I 2 153.538 110.572 123.204 1 89.9 ? C29 POV 301 B 1 
HETATM 42 C C31 POV . . . I 2 156.411 114.723 114.277 1 89.9 ? C31 POV 301 B 1 
HETATM 43 O O31 POV . . . I 2 156.154 114.37 112.891 1 89.9 ? O31 POV 301 B 1 
HETATM 44 C C32 POV . . . I 2 155.397 115.506 115.071 1 89.9 ? C32 POV 301 B 1 
HETATM 45 O O32 POV . . . I 2 157.46 114.378 114.792 1 89.9 ? O32 POV 301 B 1 
HETATM 46 C C33 POV . . . I 2 156.004 115.859 116.422 1 89.9 ? C33 POV 301 B 1 
HETATM 47 C C34 POV . . . I 2 155.121 115.365 117.559 1 89.9 ? C34 POV 301 B 1 
HETATM 48 C C35 POV . . . I 2 153.942 116.302 117.768 1 89.9 ? C35 POV 301 B 1 
HETATM 49 C C36 POV . . . I 2 153.411 116.17 119.185 1 89.9 ? C36 POV 301 B 1 
HETATM 50 C C37 POV . . . I 2 153.755 114.802 119.752 1 89.9 ? C37 POV 301 B 1 
HETATM 51 C C38 POV . . . I 2 153.466 114.762 121.244 1 89.9 ? C38 POV 301 B 1 
HETATM 52 C C39 POV . . . I 2 152.274 115.65 121.577 1 89.9 ? C39 POV 301 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           52 
#