data_6VX3
#
_model_server_result.job_id            7NpHnYUUC6qI9o6DPymCGw 
_model_server_result.datetime_utc      '2024-11-21 13:56:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    6VX3 
#
_exptl.entry_id    6VX3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE1 GLN 178 C GLN 178 1_555 E C32 POV . C POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale2 B OE1 GLN 178 A GLN 178 1_555 G C32 POV . A POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale3 C OE1 GLN 178 B GLN 178 1_555 I C32 POV . B POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale4 D OE1 GLN 178 D GLN 178 1_555 K C32 POV . D POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
_atom_sites.entry_id                     6VX3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV C 1 301 1 POV POV . 
F 2 POV C 1 302 2 POV POV . 
G 2 POV A 1 301 3 POV POV . 
H 2 POV A 1 302 4 POV POV . 
I 2 POV B 1 301 5 POV POV . 
J 2 POV B 1 302 6 POV POV . 
K 2 POV D 1 301 7 POV POV . 
L 2 POV D 1 302 8 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . K 2 108.863 106.986 109.346 1 89.9 ? N POV 301 D 1 
HETATM 2 P P POV . . . K 2 111.757 110.353 109.119 1 89.9 ? P POV 301 D 1 
HETATM 3 C C1 POV . . . K 2 111.305 109.454 111.555 1 89.9 ? C1 POV 301 D 1 
HETATM 4 C C2 POV . . . K 2 112.123 110.311 112.511 1 89.9 ? C2 POV 301 D 1 
HETATM 5 C C3 POV . . . K 2 113.595 110.232 112.125 1 89.9 ? C3 POV 301 D 1 
HETATM 6 C C210 POV . . . K 2 111.078 113.797 124.387 1 89.9 ? C210 POV 301 D 1 
HETATM 7 C C310 POV . . . K 2 114.891 116.032 122.506 1 89.9 ? C310 POV 301 D 1 
HETATM 8 C C11 POV . . . K 2 110.662 108.157 108.139 1 89.9 ? C11 POV 301 D 1 
HETATM 9 O O11 POV . . . K 2 110.868 110.25 110.455 1 89.9 ? O11 POV 301 D 1 
HETATM 10 C C211 POV . . . K 2 110.542 114.703 125.471 1 89.9 ? C211 POV 301 D 1 
HETATM 11 C C311 POV . . . K 2 115.894 116.861 123.297 1 89.9 ? C311 POV 301 D 1 
HETATM 12 C C12 POV . . . K 2 109.537 108.282 109.162 1 89.9 ? C12 POV 301 D 1 
HETATM 13 O O12 POV . . . K 2 111.827 108.824 108.621 1 89.9 ? O12 POV 301 D 1 
HETATM 14 C C212 POV . . . K 2 111.697 115.33 126.244 1 89.9 ? C212 POV 301 D 1 
HETATM 15 C C312 POV . . . K 2 115.873 116.481 124.772 1 89.9 ? C312 POV 301 D 1 
HETATM 16 C C13 POV . . . K 2 108.845 106.245 108.077 1 89.9 ? C13 POV 301 D 1 
HETATM 17 O O13 POV . . . K 2 113.146 110.787 109.516 1 89.9 ? O13 POV 301 D 1 
HETATM 18 C C213 POV . . . K 2 111.282 116.641 126.902 1 89.9 ? C213 POV 301 D 1 
HETATM 19 C C313 POV . . . K 2 116.904 117.277 125.564 1 89.9 ? C313 POV 301 D 1 
HETATM 20 C C14 POV . . . K 2 109.577 106.199 110.361 1 89.9 ? C14 POV 301 D 1 
HETATM 21 O O14 POV . . . K 2 110.983 111.147 108.096 1 89.9 ? O14 POV 301 D 1 
HETATM 22 C C214 POV . . . K 2 112.031 116.86 128.211 1 89.9 ? C214 POV 301 D 1 
HETATM 23 C C314 POV . . . K 2 117.791 118.106 124.645 1 89.9 ? C314 POV 301 D 1 
HETATM 24 C C15 POV . . . K 2 107.483 107.211 109.792 1 89.9 ? C15 POV 301 D 1 
HETATM 25 C C215 POV . . . K 2 111.094 117.385 129.292 1 89.9 ? C215 POV 301 D 1 
HETATM 26 C C315 POV . . . K 2 118.847 118.856 125.444 1 89.9 ? C315 POV 301 D 1 
HETATM 27 C C216 POV . . . K 2 111.476 116.861 130.671 1 89.9 ? C216 POV 301 D 1 
HETATM 28 C C316 POV . . . K 2 119.799 117.884 126.101 1 89.9 ? C316 POV 301 D 1 
HETATM 29 C C217 POV . . . K 2 110.28 116.902 131.617 1 89.9 ? C217 POV 301 D 1 
HETATM 30 C C218 POV . . . K 2 110.72 116.844 133.063 1 89.9 ? C218 POV 301 D 1 
HETATM 31 C C21 POV . . . K 2 110.649 110.151 114.387 1 89.9 ? C21 POV 301 D 1 
HETATM 32 O O21 POV . . . K 2 111.957 109.828 113.843 1 89.9 ? O21 POV 301 D 1 
HETATM 33 C C22 POV . . . K 2 110.436 110.199 115.882 1 89.9 ? C22 POV 301 D 1 
HETATM 34 O O22 POV . . . K 2 109.729 110.379 113.621 1 89.9 ? O22 POV 301 D 1 
HETATM 35 C C23 POV . . . K 2 110.66 111.621 116.386 1 89.9 ? C23 POV 301 D 1 
HETATM 36 C C24 POV . . . K 2 110.534 111.694 117.904 1 89.9 ? C24 POV 301 D 1 
HETATM 37 C C25 POV . . . K 2 111.063 113.021 118.436 1 89.9 ? C25 POV 301 D 1 
HETATM 38 C C26 POV . . . K 2 110.345 113.414 119.719 1 89.9 ? C26 POV 301 D 1 
HETATM 39 C C27 POV . . . K 2 111.337 113.733 120.83 1 89.9 ? C27 POV 301 D 1 
HETATM 40 C C28 POV . . . K 2 111.048 112.914 122.084 1 89.9 ? C28 POV 301 D 1 
HETATM 41 C C29 POV . . . K 2 110.524 113.815 123.178 1 89.9 ? C29 POV 301 D 1 
HETATM 42 C C31 POV . . . K 2 114.682 110.943 114.253 1 89.9 ? C31 POV 301 D 1 
HETATM 43 O O31 POV . . . K 2 114.33 111.201 112.867 1 89.9 ? O31 POV 301 D 1 
HETATM 44 C C32 POV . . . K 2 115.465 111.957 115.048 1 89.9 ? C32 POV 301 D 1 
HETATM 45 O O32 POV . . . K 2 114.336 109.894 114.768 1 89.9 ? O32 POV 301 D 1 
HETATM 46 C C33 POV . . . K 2 115.817 111.349 116.4 1 89.9 ? C33 POV 301 D 1 
HETATM 47 C C34 POV . . . K 2 115.321 112.232 117.536 1 89.9 ? C34 POV 301 D 1 
HETATM 48 C C35 POV . . . K 2 116.259 113.41 117.746 1 89.9 ? C35 POV 301 D 1 
HETATM 49 C C36 POV . . . K 2 116.125 113.942 119.164 1 89.9 ? C36 POV 301 D 1 
HETATM 50 C C37 POV . . . K 2 114.756 113.598 119.729 1 89.9 ? C37 POV 301 D 1 
HETATM 51 C C38 POV . . . K 2 114.716 113.886 121.222 1 89.9 ? C38 POV 301 D 1 
HETATM 52 C C39 POV . . . K 2 115.604 115.078 121.556 1 89.9 ? C39 POV 301 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           52 
#