data_6VX3
#
_model_server_result.job_id            LQG7RdFzimHZDCIH4xOFKA 
_model_server_result.datetime_utc      '2024-11-21 13:47:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    6VX3 
#
_exptl.entry_id    6VX3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE1 GLN 178 C GLN 178 1_555 E C32 POV . C POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale2 B OE1 GLN 178 A GLN 178 1_555 G C32 POV . A POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale3 C OE1 GLN 178 B GLN 178 1_555 I C32 POV . B POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale4 D OE1 GLN 178 D GLN 178 1_555 K C32 POV . D POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
_atom_sites.entry_id                     6VX3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV C 1 301 1 POV POV . 
F 2 POV C 1 302 2 POV POV . 
G 2 POV A 1 301 3 POV POV . 
H 2 POV A 1 302 4 POV POV . 
I 2 POV B 1 301 5 POV POV . 
J 2 POV B 1 302 6 POV POV . 
K 2 POV D 1 301 7 POV POV . 
L 2 POV D 1 302 8 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . H 2 143.488 152.505 106.78 1 72.6 ? N POV 302 A 1 
HETATM 2 P P POV . . . H 2 146.111 154.217 109.981 1 72.6 ? P POV 302 A 1 
HETATM 3 C C1 POV . . . H 2 144.439 153.459 111.878 1 72.6 ? C1 POV 302 A 1 
HETATM 4 C C2 POV . . . H 2 145.608 153.353 112.844 1 72.6 ? C2 POV 302 A 1 
HETATM 5 C C3 POV . . . H 2 145.578 151.98 113.5 1 72.6 ? C3 POV 302 A 1 
HETATM 6 C C210 POV . . . H 2 147.086 152.664 122.003 1 72.6 ? C210 POV 302 A 1 
HETATM 7 C C310 POV . . . H 2 143.676 146.784 124.705 1 72.6 ? C310 POV 302 A 1 
HETATM 8 C C11 POV . . . H 2 145.587 152.531 108.044 1 72.6 ? C11 POV 302 A 1 
HETATM 9 O O11 POV . . . H 2 144.765 154.38 110.842 1 72.6 ? O11 POV 302 A 1 
HETATM 10 C C211 POV . . . H 2 147.073 153.516 123.249 1 72.6 ? C211 POV 302 A 1 
HETATM 11 C C311 POV . . . H 2 144.049 147.132 126.14 1 72.6 ? C311 POV 302 A 1 
HETATM 12 C C12 POV . . . H 2 144.234 153.199 107.838 1 72.6 ? C12 POV 302 A 1 
HETATM 13 O O12 POV . . . H 2 145.994 152.727 109.394 1 72.6 ? O12 POV 302 A 1 
HETATM 14 C C212 POV . . . H 2 146.766 152.645 124.46 1 72.6 ? C212 POV 302 A 1 
HETATM 15 C C312 POV . . . H 2 143.565 146.056 127.104 1 72.6 ? C312 POV 302 A 1 
HETATM 16 C C13 POV . . . H 2 143.752 151.061 106.846 1 72.6 ? C13 POV 302 A 1 
HETATM 17 O O13 POV . . . H 2 146.04 155.178 108.821 1 72.6 ? O13 POV 302 A 1 
HETATM 18 C C213 POV . . . H 2 145.389 152.005 124.334 1 72.6 ? C213 POV 302 A 1 
HETATM 19 C C313 POV . . . H 2 144.553 145.861 128.246 1 72.6 ? C313 POV 302 A 1 
HETATM 20 C C14 POV . . . H 2 142.051 152.742 106.962 1 72.6 ? C14 POV 302 A 1 
HETATM 21 O O14 POV . . . H 2 147.287 154.256 110.925 1 72.6 ? O14 POV 302 A 1 
HETATM 22 C C214 POV . . . H 2 144.417 152.578 125.357 1 72.6 ? C214 POV 302 A 1 
HETATM 23 C C314 POV . . . H 2 144.519 147.041 129.209 1 72.6 ? C314 POV 302 A 1 
HETATM 24 C C15 POV . . . H 2 143.902 153.026 105.472 1 72.6 ? C15 POV 302 A 1 
HETATM 25 C C215 POV . . . H 2 142.98 152.214 125.01 1 72.6 ? C215 POV 302 A 1 
HETATM 26 C C315 POV . . . H 2 145.064 148.298 128.546 1 72.6 ? C315 POV 302 A 1 
HETATM 27 C C216 POV . . . H 2 142.587 152.79 123.657 1 72.6 ? C216 POV 302 A 1 
HETATM 28 C C316 POV . . . H 2 143.938 149.206 128.101 1 72.6 ? C316 POV 302 A 1 
HETATM 29 C C217 POV . . . H 2 141.092 153.073 123.603 1 72.6 ? C217 POV 302 A 1 
HETATM 30 C C218 POV . . . H 2 140.653 153.875 124.807 1 72.6 ? C218 POV 302 A 1 
HETATM 31 C C21 POV . . . H 2 145.844 155.685 113.291 1 72.6 ? C21 POV 302 A 1 
HETATM 32 O O21 POV . . . H 2 145.503 154.379 113.828 1 72.6 ? O21 POV 302 A 1 
HETATM 33 C C22 POV . . . H 2 147.157 156.335 113.649 1 72.6 ? C22 POV 302 A 1 
HETATM 34 O O22 POV . . . H 2 145.057 156.252 112.552 1 72.6 ? O22 POV 302 A 1 
HETATM 35 C C23 POV . . . H 2 147.036 156.967 115.027 1 72.6 ? C23 POV 302 A 1 
HETATM 36 C C24 POV . . . H 2 146.436 155.978 116.015 1 72.6 ? C24 POV 302 A 1 
HETATM 37 C C25 POV . . . H 2 146.933 156.266 117.424 1 72.6 ? C25 POV 302 A 1 
HETATM 38 C C26 POV . . . H 2 147.039 154.986 118.24 1 72.6 ? C26 POV 302 A 1 
HETATM 39 C C27 POV . . . H 2 147.696 155.262 119.586 1 72.6 ? C27 POV 302 A 1 
HETATM 40 C C28 POV . . . H 2 146.837 154.744 120.729 1 72.6 ? C28 POV 302 A 1 
HETATM 41 C C29 POV . . . H 2 146.976 153.244 120.813 1 72.6 ? C29 POV 302 A 1 
HETATM 42 C C31 POV . . . H 2 145.273 151.578 115.923 1 72.6 ? C31 POV 302 A 1 
HETATM 43 O O31 POV . . . H 2 144.729 151.993 114.644 1 72.6 ? O31 POV 302 A 1 
HETATM 44 C C32 POV . . . H 2 144.374 151.366 117.114 1 72.6 ? C32 POV 302 A 1 
HETATM 45 O O32 POV . . . H 2 146.472 151.404 116.017 1 72.6 ? O32 POV 302 A 1 
HETATM 46 C C33 POV . . . H 2 145.217 151.404 118.38 1 72.6 ? C33 POV 302 A 1 
HETATM 47 C C34 POV . . . H 2 144.762 150.343 119.371 1 72.6 ? C34 POV 302 A 1 
HETATM 48 C C35 POV . . . H 2 145.364 150.612 120.742 1 72.6 ? C35 POV 302 A 1 
HETATM 49 C C36 POV . . . H 2 144.688 149.763 121.808 1 72.6 ? C36 POV 302 A 1 
HETATM 50 C C37 POV . . . H 2 144.443 148.353 121.295 1 72.6 ? C37 POV 302 A 1 
HETATM 51 C C38 POV . . . H 2 143.677 147.537 122.324 1 72.6 ? C38 POV 302 A 1 
HETATM 52 C C39 POV . . . H 2 144.15 147.856 123.734 1 72.6 ? C39 POV 302 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           619 
_model_server_stats.encode_time_ms          49 
_model_server_stats.element_count           52 
#