data_6VX3
#
_model_server_result.job_id            pir2nG0DVWPMndGcG583_g 
_model_server_result.datetime_utc      '2024-11-21 13:47:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    6VX3 
#
_exptl.entry_id    6VX3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE1 GLN 178 C GLN 178 1_555 E C32 POV . C POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale2 B OE1 GLN 178 A GLN 178 1_555 G C32 POV . A POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale3 C OE1 GLN 178 B GLN 178 1_555 I C32 POV . B POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale4 D OE1 GLN 178 D GLN 178 1_555 K C32 POV . D POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
_atom_sites.entry_id                     6VX3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV C 1 301 1 POV POV . 
F 2 POV C 1 302 2 POV POV . 
G 2 POV A 1 301 3 POV POV . 
H 2 POV A 1 302 4 POV POV . 
I 2 POV B 1 301 5 POV POV . 
J 2 POV B 1 302 6 POV POV . 
K 2 POV D 1 301 7 POV POV . 
L 2 POV D 1 302 8 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . J 2 152.465 123.87 106.794 1 72.6 ? N POV 302 B 1 
HETATM 2 P P POV . . . J 2 154.175 121.246 109.996 1 72.6 ? P POV 302 B 1 
HETATM 3 C C1 POV . . . J 2 153.414 122.918 111.892 1 72.6 ? C1 POV 302 B 1 
HETATM 4 C C2 POV . . . J 2 153.308 121.749 112.857 1 72.6 ? C2 POV 302 B 1 
HETATM 5 C C3 POV . . . J 2 151.934 121.778 113.513 1 72.6 ? C3 POV 302 B 1 
HETATM 6 C C210 POV . . . J 2 152.611 120.268 122.016 1 72.6 ? C210 POV 302 B 1 
HETATM 7 C C310 POV . . . J 2 146.728 123.678 124.713 1 72.6 ? C310 POV 302 B 1 
HETATM 8 C C11 POV . . . J 2 152.49 121.771 108.057 1 72.6 ? C11 POV 302 B 1 
HETATM 9 O O11 POV . . . J 2 154.337 122.593 110.857 1 72.6 ? O11 POV 302 B 1 
HETATM 10 C C211 POV . . . J 2 153.462 120.281 123.262 1 72.6 ? C211 POV 302 B 1 
HETATM 11 C C311 POV . . . J 2 147.076 123.304 126.149 1 72.6 ? C311 POV 302 B 1 
HETATM 12 C C12 POV . . . J 2 153.158 123.124 107.852 1 72.6 ? C12 POV 302 B 1 
HETATM 13 O O12 POV . . . J 2 152.685 121.364 109.407 1 72.6 ? O12 POV 302 B 1 
HETATM 14 C C212 POV . . . J 2 152.59 120.588 124.473 1 72.6 ? C212 POV 302 B 1 
HETATM 15 C C312 POV . . . J 2 145.998 123.788 127.111 1 72.6 ? C312 POV 302 B 1 
HETATM 16 C C13 POV . . . J 2 151.021 123.606 106.858 1 72.6 ? C13 POV 302 B 1 
HETATM 17 O O13 POV . . . J 2 155.136 121.318 108.836 1 72.6 ? O13 POV 302 B 1 
HETATM 18 C C213 POV . . . J 2 151.95 121.965 124.347 1 72.6 ? C213 POV 302 B 1 
HETATM 19 C C313 POV . . . J 2 145.803 122.8 128.254 1 72.6 ? C313 POV 302 B 1 
HETATM 20 C C14 POV . . . J 2 152.702 125.307 106.976 1 72.6 ? C14 POV 302 B 1 
HETATM 21 O O14 POV . . . J 2 154.212 120.071 110.939 1 72.6 ? O14 POV 302 B 1 
HETATM 22 C C214 POV . . . J 2 152.522 122.937 125.371 1 72.6 ? C214 POV 302 B 1 
HETATM 23 C C314 POV . . . J 2 146.982 122.834 129.217 1 72.6 ? C314 POV 302 B 1 
HETATM 24 C C15 POV . . . J 2 152.988 123.456 105.486 1 72.6 ? C15 POV 302 B 1 
HETATM 25 C C215 POV . . . J 2 152.159 124.374 125.023 1 72.6 ? C215 POV 302 B 1 
HETATM 26 C C315 POV . . . J 2 148.24 122.289 128.555 1 72.6 ? C315 POV 302 B 1 
HETATM 27 C C216 POV . . . J 2 152.736 124.768 123.671 1 72.6 ? C216 POV 302 B 1 
HETATM 28 C C316 POV . . . J 2 149.147 123.415 128.111 1 72.6 ? C316 POV 302 B 1 
HETATM 29 C C217 POV . . . J 2 153.018 126.262 123.618 1 72.6 ? C217 POV 302 B 1 
HETATM 30 C C218 POV . . . J 2 153.819 126.701 124.822 1 72.6 ? C218 POV 302 B 1 
HETATM 31 C C21 POV . . . J 2 155.64 121.513 113.306 1 72.6 ? C21 POV 302 B 1 
HETATM 32 O O21 POV . . . J 2 154.333 121.854 113.842 1 72.6 ? O21 POV 302 B 1 
HETATM 33 C C22 POV . . . J 2 156.289 120.2 113.665 1 72.6 ? C22 POV 302 B 1 
HETATM 34 O O22 POV . . . J 2 156.207 122.3 112.568 1 72.6 ? O22 POV 302 B 1 
HETATM 35 C C23 POV . . . J 2 156.92 120.32 115.043 1 72.6 ? C23 POV 302 B 1 
HETATM 36 C C24 POV . . . J 2 155.93 120.92 116.031 1 72.6 ? C24 POV 302 B 1 
HETATM 37 C C25 POV . . . J 2 156.216 120.422 117.44 1 72.6 ? C25 POV 302 B 1 
HETATM 38 C C26 POV . . . J 2 154.937 120.316 118.255 1 72.6 ? C26 POV 302 B 1 
HETATM 39 C C27 POV . . . J 2 155.211 119.659 119.601 1 72.6 ? C27 POV 302 B 1 
HETATM 40 C C28 POV . . . J 2 154.692 120.518 120.744 1 72.6 ? C28 POV 302 B 1 
HETATM 41 C C29 POV . . . J 2 153.192 120.379 120.826 1 72.6 ? C29 POV 302 B 1 
HETATM 42 C C31 POV . . . J 2 151.53 122.083 115.935 1 72.6 ? C31 POV 302 B 1 
HETATM 43 O O31 POV . . . J 2 151.946 122.627 114.657 1 72.6 ? O31 POV 302 B 1 
HETATM 44 C C32 POV . . . J 2 151.317 122.981 117.126 1 72.6 ? C32 POV 302 B 1 
HETATM 45 O O32 POV . . . J 2 151.356 120.884 116.029 1 72.6 ? O32 POV 302 B 1 
HETATM 46 C C33 POV . . . J 2 151.354 122.138 118.392 1 72.6 ? C33 POV 302 B 1 
HETATM 47 C C34 POV . . . J 2 150.292 122.593 119.382 1 72.6 ? C34 POV 302 B 1 
HETATM 48 C C35 POV . . . J 2 150.56 121.99 120.753 1 72.6 ? C35 POV 302 B 1 
HETATM 49 C C36 POV . . . J 2 149.71 122.667 121.819 1 72.6 ? C36 POV 302 B 1 
HETATM 50 C C37 POV . . . J 2 148.301 122.912 121.305 1 72.6 ? C37 POV 302 B 1 
HETATM 51 C C38 POV . . . J 2 147.484 123.678 122.333 1 72.6 ? C38 POV 302 B 1 
HETATM 52 C C39 POV . . . J 2 147.802 123.204 123.743 1 72.6 ? C39 POV 302 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           52 
#