data_6VX3
#
_model_server_result.job_id            shegItBaw4958M0H33XKMw 
_model_server_result.datetime_utc      '2024-11-21 14:29:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":302}' 
#
_entry.id    6VX3 
#
_exptl.entry_id    6VX3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE1 GLN 178 C GLN 178 1_555 E C32 POV . C POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale2 B OE1 GLN 178 A GLN 178 1_555 G C32 POV . A POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale3 C OE1 GLN 178 B GLN 178 1_555 I C32 POV . B POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale4 D OE1 GLN 178 D GLN 178 1_555 K C32 POV . D POV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
_atom_sites.entry_id                     6VX3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV C 1 301 1 POV POV . 
F 2 POV C 1 302 2 POV POV . 
G 2 POV A 1 301 3 POV POV . 
H 2 POV A 1 302 4 POV POV . 
I 2 POV B 1 301 5 POV POV . 
J 2 POV B 1 302 6 POV POV . 
K 2 POV D 1 301 7 POV POV . 
L 2 POV D 1 302 8 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . L 2 123.836 114.889 106.779 1 72.6 ? N POV 302 D 1 
HETATM 2 P P POV . . . L 2 121.209 113.179 109.978 1 72.6 ? P POV 302 D 1 
HETATM 3 C C1 POV . . . L 2 122.88 113.938 111.876 1 72.6 ? C1 POV 302 D 1 
HETATM 4 C C2 POV . . . L 2 121.709 114.044 112.841 1 72.6 ? C2 POV 302 D 1 
HETATM 5 C C3 POV . . . L 2 121.739 115.418 113.496 1 72.6 ? C3 POV 302 D 1 
HETATM 6 C C210 POV . . . L 2 120.222 114.739 121.998 1 72.6 ? C210 POV 302 D 1 
HETATM 7 C C310 POV . . . L 2 123.631 120.62 124.7 1 72.6 ? C310 POV 302 D 1 
HETATM 8 C C11 POV . . . L 2 121.736 114.864 108.041 1 72.6 ? C11 POV 302 D 1 
HETATM 9 O O11 POV . . . L 2 122.555 113.016 110.841 1 72.6 ? O11 POV 302 D 1 
HETATM 10 C C211 POV . . . L 2 120.233 113.888 123.244 1 72.6 ? C211 POV 302 D 1 
HETATM 11 C C311 POV . . . L 2 123.256 120.273 126.135 1 72.6 ? C311 POV 302 D 1 
HETATM 12 C C12 POV . . . L 2 123.089 114.195 107.837 1 72.6 ? C12 POV 302 D 1 
HETATM 13 O O12 POV . . . L 2 121.328 114.668 109.39 1 72.6 ? O12 POV 302 D 1 
HETATM 14 C C212 POV . . . L 2 120.539 114.759 124.456 1 72.6 ? C212 POV 302 D 1 
HETATM 15 C C312 POV . . . L 2 123.739 121.35 127.098 1 72.6 ? C312 POV 302 D 1 
HETATM 16 C C13 POV . . . L 2 123.573 116.333 106.844 1 72.6 ? C13 POV 302 D 1 
HETATM 17 O O13 POV . . . L 2 121.282 112.218 108.818 1 72.6 ? O13 POV 302 D 1 
HETATM 18 C C213 POV . . . L 2 121.916 115.4 124.33 1 72.6 ? C213 POV 302 D 1 
HETATM 19 C C313 POV . . . L 2 122.75 121.545 128.24 1 72.6 ? C313 POV 302 D 1 
HETATM 20 C C14 POV . . . L 2 125.273 114.651 106.963 1 72.6 ? C14 POV 302 D 1 
HETATM 21 O O14 POV . . . L 2 120.033 113.141 110.921 1 72.6 ? O14 POV 302 D 1 
HETATM 22 C C214 POV . . . L 2 122.887 114.827 125.355 1 72.6 ? C214 POV 302 D 1 
HETATM 23 C C314 POV . . . L 2 122.783 120.366 129.203 1 72.6 ? C314 POV 302 D 1 
HETATM 24 C C15 POV . . . L 2 123.424 114.366 105.47 1 72.6 ? C15 POV 302 D 1 
HETATM 25 C C215 POV . . . L 2 124.325 115.19 125.009 1 72.6 ? C215 POV 302 D 1 
HETATM 26 C C315 POV . . . L 2 122.238 119.109 128.54 1 72.6 ? C315 POV 302 D 1 
HETATM 27 C C216 POV . . . L 2 124.72 114.613 123.656 1 72.6 ? C216 POV 302 D 1 
HETATM 28 C C316 POV . . . L 2 123.364 118.2 128.097 1 72.6 ? C316 POV 302 D 1 
HETATM 29 C C217 POV . . . L 2 126.214 114.33 123.605 1 72.6 ? C217 POV 302 D 1 
HETATM 30 C C218 POV . . . L 2 126.652 113.528 124.81 1 72.6 ? C218 POV 302 D 1 
HETATM 31 C C21 POV . . . L 2 121.473 111.713 113.289 1 72.6 ? C21 POV 302 D 1 
HETATM 32 O O21 POV . . . L 2 121.814 113.019 113.825 1 72.6 ? O21 POV 302 D 1 
HETATM 33 C C22 POV . . . L 2 120.159 111.064 113.646 1 72.6 ? C22 POV 302 D 1 
HETATM 34 O O22 POV . . . L 2 122.26 111.145 112.551 1 72.6 ? O22 POV 302 D 1 
HETATM 35 C C23 POV . . . L 2 120.278 110.432 115.024 1 72.6 ? C23 POV 302 D 1 
HETATM 36 C C24 POV . . . L 2 120.878 111.422 116.013 1 72.6 ? C24 POV 302 D 1 
HETATM 37 C C25 POV . . . L 2 120.378 111.135 117.421 1 72.6 ? C25 POV 302 D 1 
HETATM 38 C C26 POV . . . L 2 120.272 112.415 118.237 1 72.6 ? C26 POV 302 D 1 
HETATM 39 C C27 POV . . . L 2 119.614 112.14 119.582 1 72.6 ? C27 POV 302 D 1 
HETATM 40 C C28 POV . . . L 2 120.472 112.659 120.726 1 72.6 ? C28 POV 302 D 1 
HETATM 41 C C29 POV . . . L 2 120.333 114.159 120.808 1 72.6 ? C29 POV 302 D 1 
HETATM 42 C C31 POV . . . L 2 122.042 115.821 115.919 1 72.6 ? C31 POV 302 D 1 
HETATM 43 O O31 POV . . . L 2 122.587 115.405 114.641 1 72.6 ? O31 POV 302 D 1 
HETATM 44 C C32 POV . . . L 2 122.939 116.034 117.111 1 72.6 ? C32 POV 302 D 1 
HETATM 45 O O32 POV . . . L 2 120.842 115.996 116.012 1 72.6 ? O32 POV 302 D 1 
HETATM 46 C C33 POV . . . L 2 122.095 115.996 118.376 1 72.6 ? C33 POV 302 D 1 
HETATM 47 C C34 POV . . . L 2 122.55 117.058 119.367 1 72.6 ? C34 POV 302 D 1 
HETATM 48 C C35 POV . . . L 2 121.946 116.791 120.737 1 72.6 ? C35 POV 302 D 1 
HETATM 49 C C36 POV . . . L 2 122.621 117.64 121.803 1 72.6 ? C36 POV 302 D 1 
HETATM 50 C C37 POV . . . L 2 122.867 119.049 121.29 1 72.6 ? C37 POV 302 D 1 
HETATM 51 C C38 POV . . . L 2 123.632 119.865 122.32 1 72.6 ? C38 POV 302 D 1 
HETATM 52 C C39 POV . . . L 2 123.157 119.547 123.729 1 72.6 ? C39 POV 302 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           52 
#