data_6VXH
#
_model_server_result.job_id            BmPGS7uv1bdX5GDaYyTvfQ 
_model_server_result.datetime_utc      '2025-01-23 05:58:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vxh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    6VXH 
#
_exptl.entry_id    6VXH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              493.603 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VXH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VXH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 592 A CYS 592 1_555 A SG CYS 608 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 603 A CYS 603 1_555 B SG CYS 603 B CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
disulf ? disulf3 B SG CYS 592 B CYS 592 1_555 B SG CYS 608 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C29 H31 N7 O' 
_chem_comp.formula_weight    493.603 
_chem_comp.id                STI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     STI-571;IMATINIB 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C6 STI doub 365 n y 
C1 C2 STI sing 366 n y 
C1 H11 STI sing 367 n n 
C6 C5 STI sing 368 n y 
C6 H61 STI sing 369 n n 
C5 C4 STI doub 370 n y 
C5 C7 STI sing 371 n y 
C4 N3 STI sing 372 n y 
C4 H41 STI sing 373 n n 
N3 C2 STI doub 374 n y 
C2 H21 STI sing 375 n n 
C7 C12 STI doub 376 n y 
C7 N8 STI sing 377 n y 
C12 C11 STI sing 378 n y 
C12 H121 STI sing 379 n n 
C11 N10 STI doub 380 n y 
C11 H111 STI sing 381 n n 
N10 C9 STI sing 382 n y 
C9 N8 STI doub 383 n y 
C9 N13 STI sing 384 n n 
N13 C14 STI sing 385 n n 
N13 H131 STI sing 386 n n 
C14 C19 STI doub 387 n y 
C14 C15 STI sing 388 n y 
C19 C18 STI sing 389 n y 
C19 C20 STI sing 390 n n 
C18 C17 STI doub 391 n y 
C18 H181 STI sing 392 n n 
C17 C16 STI sing 393 n y 
C17 H171 STI sing 394 n n 
C16 C15 STI doub 395 n y 
C16 N21 STI sing 396 n n 
C15 H151 STI sing 397 n n 
N21 C22 STI sing 398 n n 
N21 H211 STI sing 399 n n 
C22 C23 STI sing 400 n n 
C22 O29 STI doub 401 n n 
C23 C25 STI doub 402 n y 
C23 C29 STI sing 403 n y 
C25 C26 STI sing 404 n y 
C25 H251 STI sing 405 n n 
C26 C27 STI doub 406 n y 
C26 H261 STI sing 407 n n 
C27 C28 STI sing 408 n y 
C27 C46 STI sing 409 n n 
C28 C29 STI doub 410 n y 
C28 H281 STI sing 411 n n 
C29 H291 STI sing 412 n n 
C46 N48 STI sing 413 n n 
C46 H461 STI sing 414 n n 
C46 H462 STI sing 415 n n 
N48 C53 STI sing 416 n n 
N48 C49 STI sing 417 n n 
C53 C52 STI sing 418 n n 
C53 H531 STI sing 419 n n 
C53 H532 STI sing 420 n n 
C52 N51 STI sing 421 n n 
C52 H521 STI sing 422 n n 
C52 H522 STI sing 423 n n 
N51 C54 STI sing 424 n n 
N51 C50 STI sing 425 n n 
C54 H541 STI sing 426 n n 
C54 H542 STI sing 427 n n 
C54 H543 STI sing 428 n n 
C50 C49 STI sing 429 n n 
C50 H501 STI sing 430 n n 
C50 H502 STI sing 431 n n 
C49 H491 STI sing 432 n n 
C49 H492 STI sing 433 n n 
C20 H201 STI sing 434 n n 
C20 H202 STI sing 435 n n 
C20 H203 STI sing 436 n n 
#
_atom_sites.entry_id                     6VXH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CLR A 1 701 2 CLR CLR . 
D 3 STI B 1 701 1 STI STI . 
E 2 CLR B 1 702 3 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 STI . . . D 3 114.177 100.957 103.514 1 46.56 ? C1 STI 701 B 1 
HETATM 2 C C6 STI . . . D 3 113.579 102.061 103.015 1 46.56 ? C6 STI 701 B 1 
HETATM 3 C C5 STI . . . D 3 113.202 103.057 103.845 1 46.56 ? C5 STI 701 B 1 
HETATM 4 C C4 STI . . . D 3 113.418 102.959 105.208 1 46.56 ? C4 STI 701 B 1 
HETATM 5 N N3 STI . . . D 3 114.015 101.856 105.705 1 46.56 ? N3 STI 701 B 1 
HETATM 6 C C2 STI . . . D 3 114.396 100.858 104.878 1 46.56 ? C2 STI 701 B 1 
HETATM 7 C C7 STI . . . D 3 112.593 104.178 103.315 1 46.56 ? C7 STI 701 B 1 
HETATM 8 C C12 STI . . . D 3 112.281 105.221 104.115 1 46.56 ? C12 STI 701 B 1 
HETATM 9 C C11 STI . . . D 3 111.686 106.309 103.578 1 46.56 ? C11 STI 701 B 1 
HETATM 10 N N10 STI . . . D 3 111.419 106.34 102.287 1 46.56 ? N10 STI 701 B 1 
HETATM 11 C C9 STI . . . D 3 111.732 105.3 101.482 1 46.56 ? C9 STI 701 B 1 
HETATM 12 N N8 STI . . . D 3 112.323 104.216 102.026 1 46.56 ? N8 STI 701 B 1 
HETATM 13 N N13 STI . . . D 3 111.457 105.262 100.048 1 46.56 ? N13 STI 701 B 1 
HETATM 14 C C14 STI . . . D 3 110.907 106.302 99.184 1 46.56 ? C14 STI 701 B 1 
HETATM 15 C C19 STI . . . D 3 111.22 106.194 97.849 1 46.56 ? C19 STI 701 B 1 
HETATM 16 C C18 STI . . . D 3 110.747 107.115 96.935 1 46.56 ? C18 STI 701 B 1 
HETATM 17 C C17 STI . . . D 3 109.941 108.155 97.37 1 46.56 ? C17 STI 701 B 1 
HETATM 18 C C16 STI . . . D 3 109.597 108.272 98.708 1 46.56 ? C16 STI 701 B 1 
HETATM 19 C C15 STI . . . D 3 110.087 107.342 99.611 1 46.56 ? C15 STI 701 B 1 
HETATM 20 N N21 STI . . . D 3 108.763 109.37 99.208 1 46.56 ? N21 STI 701 B 1 
HETATM 21 C C22 STI . . . D 3 107.642 110.029 98.533 1 46.56 ? C22 STI 701 B 1 
HETATM 22 C C23 STI . . . D 3 106.952 111.173 99.283 1 46.56 ? C23 STI 701 B 1 
HETATM 23 C C25 STI . . . D 3 105.847 111.828 98.765 1 46.56 ? C25 STI 701 B 1 
HETATM 24 C C26 STI . . . D 3 105.27 112.866 99.491 1 46.56 ? C26 STI 701 B 1 
HETATM 25 C C27 STI . . . D 3 105.791 113.244 100.726 1 46.56 ? C27 STI 701 B 1 
HETATM 26 C C28 STI . . . D 3 106.907 112.586 101.215 1 46.56 ? C28 STI 701 B 1 
HETATM 27 C C29 STI . . . D 3 107.485 111.554 100.499 1 46.56 ? C29 STI 701 B 1 
HETATM 28 C C46 STI . . . D 3 105.167 114.414 101.517 1 46.56 ? C46 STI 701 B 1 
HETATM 29 N N48 STI . . . D 3 104.642 114.107 102.841 1 46.56 ? N48 STI 701 B 1 
HETATM 30 C C53 STI . . . D 3 103.389 114.843 102.94 1 46.56 ? C53 STI 701 B 1 
HETATM 31 C C52 STI . . . D 3 102.834 114.945 104.36 1 46.56 ? C52 STI 701 B 1 
HETATM 32 N N51 STI . . . D 3 103.843 115.408 105.294 1 46.56 ? N51 STI 701 B 1 
HETATM 33 C C54 STI . . . D 3 103.293 115.415 106.639 1 46.56 ? C54 STI 701 B 1 
HETATM 34 C C50 STI . . . D 3 105.038 114.585 105.259 1 46.56 ? C50 STI 701 B 1 
HETATM 35 C C49 STI . . . D 3 105.612 114.525 103.845 1 46.56 ? C49 STI 701 B 1 
HETATM 36 O O29 STI . . . D 3 107.263 109.745 97.453 1 46.56 ? O29 STI 701 B 1 
HETATM 37 C C20 STI . . . D 3 112.108 105.041 97.404 1 46.56 ? C20 STI 701 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           367 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           37 
#