data_6VXI
#
_model_server_result.job_id            WpIfSZ41EcbIIcYWePHw6w 
_model_server_result.datetime_utc      '2024-11-04 23:12:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vxi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    6VXI 
#
_exptl.entry_id    6VXI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              444.481 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VXI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VXI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 592 A CYS 592 1_555 A SG CYS 608 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 A SG CYS 603 A CYS 603 1_555 B SG CYS 603 B CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 B SG CYS 592 B CYS 592 1_555 B SG CYS 608 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
#
_chem_comp.formula           'C22 H28 N4 O6' 
_chem_comp.formula_weight    444.481 
_chem_comp.id                MIX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'MITOXANTRONE, 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)ANTHRA-9,10-QUINONE' 
#
_atom_sites.entry_id                     6VXI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CLR A 1 701 2 CLR CLR . 
D 3 MIX B 1 701 1 MIX MIX . 
E 2 CLR B 1 702 3 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAC MIX . . . D 3 4.112 5.986 4.799 1 28.91 ? OAC MIX 701 B 1 
HETATM 2 C CAK MIX . . . D 3 3.327 4.869 5.095 1 28.91 ? CAK MIX 701 B 1 
HETATM 3 C CAM MIX . . . D 3 3.462 3.824 3.905 1 28.91 ? CAM MIX 701 B 1 
HETATM 4 N NAS MIX . . . D 3 2.432 2.724 4.029 1 28.91 ? NAS MIX 701 B 1 
HETATM 5 C CAO MIX . . . D 3 2.256 2.19 2.691 1 28.91 ? CAO MIX 701 B 1 
HETATM 6 C CAQ MIX . . . D 3 1.645 0.743 2.723 1 28.91 ? CAQ MIX 701 B 1 
HETATM 7 N NAU MIX . . . D 3 0.265 0.804 3.228 1 28.91 ? NAU MIX 701 B 1 
HETATM 8 C CAY MIX . . . D 3 -0.604 -0.407 3.279 1 28.91 ? CAY MIX 701 B 1 
HETATM 9 C CAI MIX . . . D 3 -1.082 -1.03 2.125 1 28.91 ? CAI MIX 701 B 1 
HETATM 10 C CAJ MIX . . . D 3 -1.911 -2.168 2.224 1 28.91 ? CAJ MIX 701 B 1 
HETATM 11 C CBE MIX . . . D 3 -0.956 -0.911 4.523 1 28.91 ? CBE MIX 701 B 1 
HETATM 12 C CBA MIX . . . D 3 -0.424 -0.205 5.801 1 28.91 ? CBA MIX 701 B 1 
HETATM 13 O OAA MIX . . . D 3 0.255 0.726 5.715 1 28.91 ? OAA MIX 701 B 1 
HETATM 14 C CBC MIX . . . D 3 -0.814 -0.769 7.179 1 28.91 ? CBC MIX 701 B 1 
HETATM 15 C CAW MIX . . . D 3 -0.343 -0.147 8.324 1 28.91 ? CAW MIX 701 B 1 
HETATM 16 O OAE MIX . . . D 3 0.471 0.973 8.337 1 28.91 ? OAE MIX 701 B 1 
HETATM 17 C CAG MIX . . . D 3 -0.7 -0.654 9.571 1 28.91 ? CAG MIX 701 B 1 
HETATM 18 C CAH MIX . . . D 3 -1.512 -1.767 9.666 1 28.91 ? CAH MIX 701 B 1 
HETATM 19 C CAX MIX . . . D 3 -1.978 -2.399 8.497 1 28.91 ? CAX MIX 701 B 1 
HETATM 20 O OAF MIX . . . D 3 -2.803 -3.533 8.644 1 28.91 ? OAF MIX 701 B 1 
HETATM 21 C CBD MIX . . . D 3 -1.637 -1.899 7.278 1 28.91 ? CBD MIX 701 B 1 
HETATM 22 C CBB MIX . . . D 3 -2.157 -2.607 5.998 1 28.91 ? CBB MIX 701 B 1 
HETATM 23 O OAB MIX . . . D 3 -2.858 -3.553 6.076 1 28.91 ? OAB MIX 701 B 1 
HETATM 24 C CBF MIX . . . D 3 -1.776 -2.036 4.625 1 28.91 ? CBF MIX 701 B 1 
HETATM 25 C CAZ MIX . . . D 3 -2.251 -2.665 3.485 1 28.91 ? CAZ MIX 701 B 1 
HETATM 26 N NAV MIX . . . D 3 -3.103 -3.829 3.743 1 28.91 ? NAV MIX 701 B 1 
HETATM 27 C CAR MIX . . . D 3 -3.371 -4.838 2.705 1 28.91 ? CAR MIX 701 B 1 
HETATM 28 C CAP MIX . . . D 3 -3.829 -6.104 3.448 1 28.91 ? CAP MIX 701 B 1 
HETATM 29 N NAT MIX . . . D 3 -4.393 -7.041 2.504 1 28.91 ? NAT MIX 701 B 1 
HETATM 30 C CAN MIX . . . D 3 -5.688 -7.581 3.058 1 28.91 ? CAN MIX 701 B 1 
HETATM 31 C CAL MIX . . . D 3 -5.417 -8.331 4.356 1 28.91 ? CAL MIX 701 B 1 
HETATM 32 O OAD MIX . . . D 3 -5.993 -7.64 5.395 1 28.91 ? OAD MIX 701 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#