data_6VXJ # _model_server_result.job_id pvRPg_Js11PgcNwiKDFsEA _model_server_result.datetime_utc '2024-11-21 14:40:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 6VXJ # _exptl.entry_id 6VXJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 392.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-ethyl-10-hydroxycamptothecin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VXJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 592 A CYS 592 1_555 A SG CYS 608 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 603 A CYS 603 1_555 B SG CYS 603 B CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 592 B CYS 592 1_555 B SG CYS 608 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C22 H20 N2 O5' _chem_comp.formula_weight 392.405 _chem_comp.id RS4 _chem_comp.mon_nstd_flag . _chem_comp.name 7-ethyl-10-hydroxycamptothecin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "(4S)-4,11-diethyl-4,9-dihydroxy-1H-pyrano[3',4':6,7]indolizino[1,2-b]quinoline-3,14(4H,12H)-dione" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 RS4 sing 352 n n C7 C25 RS4 sing 353 n n C6 C5 RS4 doub 354 n y C6 C1 RS4 sing 355 n y C5 C4 RS4 sing 356 n y O1 C25 RS4 sing 357 n n O31 C28 RS4 doub 358 n n C25 C28 RS4 sing 359 n n C25 C20 RS4 sing 360 n n N13 C1 RS4 doub 361 n y N13 C11 RS4 sing 362 n y C1 C2 RS4 sing 363 n y O7 C4 RS4 sing 364 n n C4 C3 RS4 doub 365 n y C28 O29 RS4 sing 366 n n C19 C20 RS4 sing 367 n n C19 C17 RS4 doub 368 n n C20 C21 RS4 doub 369 n n C11 C17 RS4 sing 370 n n C11 C10 RS4 doub 371 n y C17 N18 RS4 sing 372 n n C3 C2 RS4 sing 373 n y C2 C9 RS4 doub 374 n y O29 C24 RS4 sing 375 n n C21 C24 RS4 sing 376 n n C21 C22 RS4 sing 377 n n C10 C9 RS4 sing 378 n y C10 C16 RS4 sing 379 n n C9 C14 RS4 sing 380 n n N18 C22 RS4 sing 381 n n N18 C16 RS4 sing 382 n n C22 O23 RS4 doub 383 n n C14 C15 RS4 sing 384 n n C14 H1 RS4 sing 385 n n C14 H2 RS4 sing 386 n n C15 H3 RS4 sing 387 n n C15 H4 RS4 sing 388 n n C15 H5 RS4 sing 389 n n C16 H6 RS4 sing 390 n n C16 H7 RS4 sing 391 n n C19 H8 RS4 sing 392 n n C24 H9 RS4 sing 393 n n C24 H10 RS4 sing 394 n n C3 H11 RS4 sing 395 n n C5 H12 RS4 sing 396 n n C6 H13 RS4 sing 397 n n C7 H14 RS4 sing 398 n n C7 H15 RS4 sing 399 n n C8 H16 RS4 sing 400 n n C8 H17 RS4 sing 401 n n C8 H18 RS4 sing 402 n n O1 H19 RS4 sing 403 n n O7 H20 RS4 sing 404 n n # _atom_sites.entry_id 6VXJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CLR A 1 701 2 CLR CLR . D 3 RS4 B 1 701 1 RS4 7EH . E 2 CLR B 1 702 3 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RS4 . . . D 3 -1.069 -1.71 5.433 1 41.22 ? C10 RS4 701 B 1 HETATM 2 C C11 RS4 . . . D 3 -0.789 -1.205 4.092 1 41.22 ? C11 RS4 701 B 1 HETATM 3 C C14 RS4 . . . D 3 -2.36 -3.513 6.887 1 41.22 ? C14 RS4 701 B 1 HETATM 4 C C15 RS4 . . . D 3 -3.207 -2.66 7.792 1 41.22 ? C15 RS4 701 B 1 HETATM 5 C C16 RS4 . . . D 3 -0.338 -0.933 6.437 1 41.22 ? C16 RS4 701 B 1 HETATM 6 C C17 RS4 . . . D 3 0.135 -0.087 4.288 1 41.22 ? C17 RS4 701 B 1 HETATM 7 C C1 RS4 . . . D 3 -2.14 -2.752 3.008 1 41.22 ? C1 RS4 701 B 1 HETATM 8 C C19 RS4 . . . D 3 0.681 0.701 3.297 1 41.22 ? C19 RS4 701 B 1 HETATM 9 C C2 RS4 . . . D 3 -2.526 -3.383 4.297 1 41.22 ? C2 RS4 701 B 1 HETATM 10 C C20 RS4 . . . D 3 1.531 1.722 3.673 1 41.22 ? C20 RS4 701 B 1 HETATM 11 C C21 RS4 . . . D 3 1.816 1.904 5.108 1 41.22 ? C21 RS4 701 B 1 HETATM 12 C C22 RS4 . . . D 3 1.172 0.986 6.068 1 41.22 ? C22 RS4 701 B 1 HETATM 13 C C24 RS4 . . . D 3 2.741 2.983 5.592 1 41.22 ? C24 RS4 701 B 1 HETATM 14 C C25 RS4 . . . D 3 2.153 2.584 2.634 1 41.22 ? C25 RS4 701 B 1 HETATM 15 C C28 RS4 . . . D 3 2.829 3.781 3.234 1 41.22 ? C28 RS4 701 B 1 HETATM 16 C C3 RS4 . . . D 3 -3.394 -4.459 4.29 1 41.22 ? C3 RS4 701 B 1 HETATM 17 C C4 RS4 . . . D 3 -3.895 -4.937 3.087 1 41.22 ? C4 RS4 701 B 1 HETATM 18 C C5 RS4 . . . D 3 -3.533 -4.347 1.881 1 41.22 ? C5 RS4 701 B 1 HETATM 19 C C6 RS4 . . . D 3 -2.665 -3.264 1.838 1 41.22 ? C6 RS4 701 B 1 HETATM 20 C C7 RS4 . . . D 3 1.107 2.997 1.614 1 41.22 ? C7 RS4 701 B 1 HETATM 21 C C8 RS4 . . . D 3 1.379 2.413 0.24 1 41.22 ? C8 RS4 701 B 1 HETATM 22 C C9 RS4 . . . D 3 -1.987 -2.86 5.576 1 41.22 ? C9 RS4 701 B 1 HETATM 23 N N13 RS4 . . . D 3 -1.299 -1.701 2.949 1 41.22 ? N13 RS4 701 B 1 HETATM 24 N N18 RS4 . . . D 3 0.366 0.045 5.593 1 41.22 ? N18 RS4 701 B 1 HETATM 25 O O1 RS4 . . . D 3 3.151 1.801 1.981 1 41.22 ? O1 RS4 701 B 1 HETATM 26 O O23 RS4 . . . D 3 1.374 1.097 7.293 1 41.22 ? O23 RS4 701 B 1 HETATM 27 O O29 RS4 . . . D 3 2.764 4.045 4.652 1 41.22 ? O29 RS4 701 B 1 HETATM 28 O O31 RS4 . . . D 3 3.443 4.56 2.531 1 41.22 ? O31 RS4 701 B 1 HETATM 29 O O7 RS4 . . . D 3 -4.749 -5.998 3.081 1 41.22 ? O7 RS4 701 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 29 #