data_6VXJ
#
_model_server_result.job_id            9x62xBq6S6tcuipMefn41Q 
_model_server_result.datetime_utc      '2024-11-04 22:55:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vxj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    6VXJ 
#
_exptl.entry_id    6VXJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              392.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-ethyl-10-hydroxycamptothecin 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VXJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VXJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 592 A CYS 592 1_555 A SG CYS 608 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 603 A CYS 603 1_555 B SG CYS 603 B CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 B SG CYS 592 B CYS 592 1_555 B SG CYS 608 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C22 H20 N2 O5' 
_chem_comp.formula_weight    392.405 
_chem_comp.id                RS4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-ethyl-10-hydroxycamptothecin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "(4S)-4,11-diethyl-4,9-dihydroxy-1H-pyrano[3',4':6,7]indolizino[1,2-b]quinoline-3,14(4H,12H)-dione" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 RS4 sing 352 n n 
C7 C25 RS4 sing 353 n n 
C6 C5 RS4 doub 354 n y 
C6 C1 RS4 sing 355 n y 
C5 C4 RS4 sing 356 n y 
O1 C25 RS4 sing 357 n n 
O31 C28 RS4 doub 358 n n 
C25 C28 RS4 sing 359 n n 
C25 C20 RS4 sing 360 n n 
N13 C1 RS4 doub 361 n y 
N13 C11 RS4 sing 362 n y 
C1 C2 RS4 sing 363 n y 
O7 C4 RS4 sing 364 n n 
C4 C3 RS4 doub 365 n y 
C28 O29 RS4 sing 366 n n 
C19 C20 RS4 sing 367 n n 
C19 C17 RS4 doub 368 n n 
C20 C21 RS4 doub 369 n n 
C11 C17 RS4 sing 370 n n 
C11 C10 RS4 doub 371 n y 
C17 N18 RS4 sing 372 n n 
C3 C2 RS4 sing 373 n y 
C2 C9 RS4 doub 374 n y 
O29 C24 RS4 sing 375 n n 
C21 C24 RS4 sing 376 n n 
C21 C22 RS4 sing 377 n n 
C10 C9 RS4 sing 378 n y 
C10 C16 RS4 sing 379 n n 
C9 C14 RS4 sing 380 n n 
N18 C22 RS4 sing 381 n n 
N18 C16 RS4 sing 382 n n 
C22 O23 RS4 doub 383 n n 
C14 C15 RS4 sing 384 n n 
C14 H1 RS4 sing 385 n n 
C14 H2 RS4 sing 386 n n 
C15 H3 RS4 sing 387 n n 
C15 H4 RS4 sing 388 n n 
C15 H5 RS4 sing 389 n n 
C16 H6 RS4 sing 390 n n 
C16 H7 RS4 sing 391 n n 
C19 H8 RS4 sing 392 n n 
C24 H9 RS4 sing 393 n n 
C24 H10 RS4 sing 394 n n 
C3 H11 RS4 sing 395 n n 
C5 H12 RS4 sing 396 n n 
C6 H13 RS4 sing 397 n n 
C7 H14 RS4 sing 398 n n 
C7 H15 RS4 sing 399 n n 
C8 H16 RS4 sing 400 n n 
C8 H17 RS4 sing 401 n n 
C8 H18 RS4 sing 402 n n 
O1 H19 RS4 sing 403 n n 
O7 H20 RS4 sing 404 n n 
#
_atom_sites.entry_id                     6VXJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CLR A 1 701 2 CLR CLR . 
D 3 RS4 B 1 701 1 RS4 7EH . 
E 2 CLR B 1 702 3 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 RS4 . . . D 3 -1.069 -1.71 5.433 1 41.22 ? C10 RS4 701 B 1 
HETATM 2 C C11 RS4 . . . D 3 -0.789 -1.205 4.092 1 41.22 ? C11 RS4 701 B 1 
HETATM 3 C C14 RS4 . . . D 3 -2.36 -3.513 6.887 1 41.22 ? C14 RS4 701 B 1 
HETATM 4 C C15 RS4 . . . D 3 -3.207 -2.66 7.792 1 41.22 ? C15 RS4 701 B 1 
HETATM 5 C C16 RS4 . . . D 3 -0.338 -0.933 6.437 1 41.22 ? C16 RS4 701 B 1 
HETATM 6 C C17 RS4 . . . D 3 0.135 -0.087 4.288 1 41.22 ? C17 RS4 701 B 1 
HETATM 7 C C1 RS4 . . . D 3 -2.14 -2.752 3.008 1 41.22 ? C1 RS4 701 B 1 
HETATM 8 C C19 RS4 . . . D 3 0.681 0.701 3.297 1 41.22 ? C19 RS4 701 B 1 
HETATM 9 C C2 RS4 . . . D 3 -2.526 -3.383 4.297 1 41.22 ? C2 RS4 701 B 1 
HETATM 10 C C20 RS4 . . . D 3 1.531 1.722 3.673 1 41.22 ? C20 RS4 701 B 1 
HETATM 11 C C21 RS4 . . . D 3 1.816 1.904 5.108 1 41.22 ? C21 RS4 701 B 1 
HETATM 12 C C22 RS4 . . . D 3 1.172 0.986 6.068 1 41.22 ? C22 RS4 701 B 1 
HETATM 13 C C24 RS4 . . . D 3 2.741 2.983 5.592 1 41.22 ? C24 RS4 701 B 1 
HETATM 14 C C25 RS4 . . . D 3 2.153 2.584 2.634 1 41.22 ? C25 RS4 701 B 1 
HETATM 15 C C28 RS4 . . . D 3 2.829 3.781 3.234 1 41.22 ? C28 RS4 701 B 1 
HETATM 16 C C3 RS4 . . . D 3 -3.394 -4.459 4.29 1 41.22 ? C3 RS4 701 B 1 
HETATM 17 C C4 RS4 . . . D 3 -3.895 -4.937 3.087 1 41.22 ? C4 RS4 701 B 1 
HETATM 18 C C5 RS4 . . . D 3 -3.533 -4.347 1.881 1 41.22 ? C5 RS4 701 B 1 
HETATM 19 C C6 RS4 . . . D 3 -2.665 -3.264 1.838 1 41.22 ? C6 RS4 701 B 1 
HETATM 20 C C7 RS4 . . . D 3 1.107 2.997 1.614 1 41.22 ? C7 RS4 701 B 1 
HETATM 21 C C8 RS4 . . . D 3 1.379 2.413 0.24 1 41.22 ? C8 RS4 701 B 1 
HETATM 22 C C9 RS4 . . . D 3 -1.987 -2.86 5.576 1 41.22 ? C9 RS4 701 B 1 
HETATM 23 N N13 RS4 . . . D 3 -1.299 -1.701 2.949 1 41.22 ? N13 RS4 701 B 1 
HETATM 24 N N18 RS4 . . . D 3 0.366 0.045 5.593 1 41.22 ? N18 RS4 701 B 1 
HETATM 25 O O1 RS4 . . . D 3 3.151 1.801 1.981 1 41.22 ? O1 RS4 701 B 1 
HETATM 26 O O23 RS4 . . . D 3 1.374 1.097 7.293 1 41.22 ? O23 RS4 701 B 1 
HETATM 27 O O29 RS4 . . . D 3 2.764 4.045 4.652 1 41.22 ? O29 RS4 701 B 1 
HETATM 28 O O31 RS4 . . . D 3 3.443 4.56 2.531 1 41.22 ? O31 RS4 701 B 1 
HETATM 29 O O7 RS4 . . . D 3 -4.749 -5.998 3.081 1 41.22 ? O7 RS4 701 B 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           29 
#