data_6VXO # _model_server_result.job_id JWy60aGDcsNQGMlkqWV93w _model_server_result.datetime_utc '2024-11-21 13:53:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":302}' # _entry.id 6VXO # _exptl.entry_id 6VXO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VXO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 245 n n N C13 POV sing 246 n n N C14 POV sing 247 n n N C15 POV sing 248 n n P O11 POV sing 249 n n P O12 POV sing 250 n n P O13 POV sing 251 n n P O14 POV doub 252 n n C1 C2 POV sing 253 n n C1 O11 POV sing 254 n n C1 H1 POV sing 255 n n C1 H1A POV sing 256 n n C2 C3 POV sing 257 n n C2 O21 POV sing 258 n n C2 H2 POV sing 259 n n C3 O31 POV sing 260 n n C3 H3 POV sing 261 n n C3 H3A POV sing 262 n n C210 C211 POV sing 263 n n C210 C29 POV doub 264 z n C210 H210 POV sing 265 n n C310 C311 POV sing 266 n n C310 C39 POV sing 267 n n C310 H310 POV sing 268 n n C310 H31A POV sing 269 n n C11 C12 POV sing 270 n n C11 O12 POV sing 271 n n C11 H11 POV sing 272 n n C11 H11A POV sing 273 n n C211 C212 POV sing 274 n n C211 H211 POV sing 275 n n C211 H21A POV sing 276 n n C311 C312 POV sing 277 n n C311 H311 POV sing 278 n n C311 H31B POV sing 279 n n C12 H12 POV sing 280 n n C12 H12A POV sing 281 n n C212 C213 POV sing 282 n n C212 H212 POV sing 283 n n C212 H21B POV sing 284 n n C312 C313 POV sing 285 n n C312 H312 POV sing 286 n n C312 H31C POV sing 287 n n C13 H13 POV sing 288 n n C13 H13A POV sing 289 n n C13 H13B POV sing 290 n n C213 C214 POV sing 291 n n C213 H213 POV sing 292 n n C213 H21C POV sing 293 n n C313 C314 POV sing 294 n n C313 H313 POV sing 295 n n C313 H31D POV sing 296 n n C14 H14 POV sing 297 n n C14 H14A POV sing 298 n n C14 H14B POV sing 299 n n C214 C215 POV sing 300 n n C214 H214 POV sing 301 n n C214 H21D POV sing 302 n n C314 C315 POV sing 303 n n C314 H314 POV sing 304 n n C314 H31E POV sing 305 n n C15 H15 POV sing 306 n n C15 H15A POV sing 307 n n C15 H15B POV sing 308 n n C215 C216 POV sing 309 n n C215 H215 POV sing 310 n n C215 H21E POV sing 311 n n C315 C316 POV sing 312 n n C315 H315 POV sing 313 n n C315 H31F POV sing 314 n n C216 C217 POV sing 315 n n C216 H216 POV sing 316 n n C216 H21F POV sing 317 n n C316 H316 POV sing 318 n n C316 H31G POV sing 319 n n C316 H31H POV sing 320 n n C217 C218 POV sing 321 n n C217 H217 POV sing 322 n n C217 H21G POV sing 323 n n C218 H218 POV sing 324 n n C218 H21H POV sing 325 n n C218 H21J POV sing 326 n n C21 O21 POV sing 327 n n C21 C22 POV sing 328 n n C21 O22 POV doub 329 n n C22 C23 POV sing 330 n n C22 H22 POV sing 331 n n C22 H22A POV sing 332 n n C23 C24 POV sing 333 n n C23 H23 POV sing 334 n n C23 H23A POV sing 335 n n C24 C25 POV sing 336 n n C24 H24 POV sing 337 n n C24 H24A POV sing 338 n n C25 C26 POV sing 339 n n C25 H25 POV sing 340 n n C25 H25A POV sing 341 n n C26 C27 POV sing 342 n n C26 H26 POV sing 343 n n C26 H26A POV sing 344 n n C27 C28 POV sing 345 n n C27 H27 POV sing 346 n n C27 H27A POV sing 347 n n C28 C29 POV sing 348 n n C28 H28 POV sing 349 n n C28 H28A POV sing 350 n n C29 H29 POV sing 351 n n C31 O31 POV sing 352 n n C31 C32 POV sing 353 n n C31 O32 POV doub 354 n n C32 C33 POV sing 355 n n C32 H32 POV sing 356 n n C32 H32A POV sing 357 n n C33 C34 POV sing 358 n n C33 H33 POV sing 359 n n C33 H33A POV sing 360 n n C34 C35 POV sing 361 n n C34 H34 POV sing 362 n n C34 H34A POV sing 363 n n C35 C36 POV sing 364 n n C35 H35 POV sing 365 n n C35 H35A POV sing 366 n n C36 C37 POV sing 367 n n C36 H36 POV sing 368 n n C36 H36A POV sing 369 n n C37 C38 POV sing 370 n n C37 H37 POV sing 371 n n C37 H37A POV sing 372 n n C38 C39 POV sing 373 n n C38 H38 POV sing 374 n n C38 H38A POV sing 375 n n C39 H39 POV sing 376 n n C39 H39A POV sing 377 n n # _atom_sites.entry_id 6VXO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 POV A 1 301 1 POV POV . F 2 POV A 1 302 8 POV POV . G 2 POV A 1 303 9 POV POV . H 2 POV C 1 301 4 POV POV . I 2 POV C 1 302 12 POV POV . J 2 POV D 1 301 2 POV POV . K 2 POV D 1 302 3 POV POV . L 2 POV D 1 303 7 POV POV . M 2 POV D 1 304 11 POV POV . N 2 POV E 1 301 5 POV POV . O 2 POV E 1 302 6 POV POV . P 2 POV E 1 303 10 POV POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . K 2 130.399 107.471 105.781 1 86.91 ? N POV 302 D 1 HETATM 2 P P POV . . . K 2 131.371 105.381 109.188 1 86.91 ? P POV 302 D 1 HETATM 3 C C1 POV . . . K 2 130.804 107.429 110.748 1 86.91 ? C1 POV 302 D 1 HETATM 4 C C2 POV . . . K 2 131.233 106.636 111.976 1 86.91 ? C2 POV 302 D 1 HETATM 5 C C3 POV . . . K 2 130.027 106.471 112.906 1 86.91 ? C3 POV 302 D 1 HETATM 6 C C210 POV . . . K 2 134.935 110.364 123.614 1 86.91 ? C210 POV 302 D 1 HETATM 7 C C310 POV . . . K 2 132.921 104.349 122.916 1 86.91 ? C310 POV 302 D 1 HETATM 8 C C11 POV . . . K 2 131.791 105.528 106.574 1 86.91 ? C11 POV 302 D 1 HETATM 9 O O11 POV . . . K 2 130.324 106.538 109.77 1 86.91 ? O11 POV 302 D 1 HETATM 10 C C211 POV . . . K 2 135.844 109.72 124.691 1 86.91 ? C211 POV 302 D 1 HETATM 11 C C311 POV . . . K 2 132.319 105.312 123.98 1 86.91 ? C311 POV 302 D 1 HETATM 12 C C12 POV . . . K 2 131.627 107.075 106.485 1 86.91 ? C12 POV 302 D 1 HETATM 13 O O12 POV . . . K 2 130.961 105.03 107.613 1 86.91 ? O12 POV 302 D 1 HETATM 14 C C212 POV . . . K 2 135.298 110.043 126.094 1 86.91 ? C212 POV 302 D 1 HETATM 15 C C312 POV . . . K 2 133.081 105.142 125.316 1 86.91 ? C312 POV 302 D 1 HETATM 16 C C13 POV . . . K 2 130.607 108.726 105.115 1 86.91 ? C13 POV 302 D 1 HETATM 17 O O13 POV . . . K 2 131.243 104.122 110.014 1 86.91 ? O13 POV 302 D 1 HETATM 18 C C213 POV . . . K 2 136.341 110.9 126.848 1 86.91 ? C213 POV 302 D 1 HETATM 19 C C313 POV . . . K 2 132.311 105.881 126.435 1 86.91 ? C313 POV 302 D 1 HETATM 20 C C14 POV . . . K 2 130.022 106.501 104.801 1 86.91 ? C14 POV 302 D 1 HETATM 21 O O14 POV . . . K 2 132.791 105.881 109.25 1 86.91 ? O14 POV 302 D 1 HETATM 22 C C214 POV . . . K 2 136.107 110.778 128.369 1 86.91 ? C214 POV 302 D 1 HETATM 23 C C314 POV . . . K 2 133.189 105.995 127.7 1 86.91 ? C314 POV 302 D 1 HETATM 24 C C15 POV . . . K 2 129.326 107.622 106.746 1 86.91 ? C15 POV 302 D 1 HETATM 25 C C215 POV . . . K 2 137.425 111.05 129.118 1 86.91 ? C215 POV 302 D 1 HETATM 26 C C315 POV . . . K 2 133.838 104.633 128.013 1 86.91 ? C315 POV 302 D 1 HETATM 27 C C216 POV . . . K 2 137.163 111.981 130.304 1 86.91 ? C216 POV 302 D 1 HETATM 28 C C316 POV . . . K 2 134.3 104.62 129.471 1 86.91 ? C316 POV 302 D 1 HETATM 29 C C217 POV . . . K 2 138.487 112.566 130.79 1 86.91 ? C217 POV 302 D 1 HETATM 30 C C218 POV . . . K 2 138.265 113.259 132.139 1 86.91 ? C218 POV 302 D 1 HETATM 31 C C21 POV . . . K 2 132.002 108.261 113.571 1 86.91 ? C21 POV 302 D 1 HETATM 32 O O21 POV . . . K 2 132.312 107.262 112.617 1 86.91 ? O21 POV 302 D 1 HETATM 33 C C22 POV . . . K 2 132.317 108.031 115.069 1 86.91 ? C22 POV 302 D 1 HETATM 34 O O22 POV . . . K 2 131.524 109.285 113.231 1 86.91 ? O22 POV 302 D 1 HETATM 35 C C23 POV . . . K 2 132.303 109.397 115.787 1 86.91 ? C23 POV 302 D 1 HETATM 36 C C24 POV . . . K 2 131.928 109.181 117.271 1 86.91 ? C24 POV 302 D 1 HETATM 37 C C25 POV . . . K 2 133.141 108.618 118.038 1 86.91 ? C25 POV 302 D 1 HETATM 38 C C26 POV . . . K 2 133.685 109.702 118.988 1 86.91 ? C26 POV 302 D 1 HETATM 39 C C27 POV . . . K 2 133.343 109.317 120.433 1 86.91 ? C27 POV 302 D 1 HETATM 40 C C28 POV . . . K 2 133.893 110.408 121.353 1 86.91 ? C28 POV 302 D 1 HETATM 41 C C29 POV . . . K 2 134.796 109.768 122.426 1 86.91 ? C29 POV 302 D 1 HETATM 42 C C31 POV . . . K 2 128.698 104.803 113.958 1 86.91 ? C31 POV 302 D 1 HETATM 43 O O31 POV . . . K 2 129.655 105.103 112.947 1 86.91 ? O31 POV 302 D 1 HETATM 44 C C32 POV . . . K 2 128.977 105.199 115.437 1 86.91 ? C32 POV 302 D 1 HETATM 45 O O32 POV . . . K 2 127.699 104.247 113.67 1 86.91 ? O32 POV 302 D 1 HETATM 46 C C33 POV . . . K 2 127.638 105.483 116.164 1 86.91 ? C33 POV 302 D 1 HETATM 47 C C34 POV . . . K 2 127.898 105.981 117.615 1 86.91 ? C34 POV 302 D 1 HETATM 48 C C35 POV . . . K 2 129.183 105.33 118.181 1 86.91 ? C35 POV 302 D 1 HETATM 49 C C36 POV . . . K 2 129.595 106.025 119.507 1 86.91 ? C36 POV 302 D 1 HETATM 50 C C37 POV . . . K 2 131.095 105.716 119.773 1 86.91 ? C37 POV 302 D 1 HETATM 51 C C38 POV . . . K 2 131.364 105.577 121.299 1 86.91 ? C38 POV 302 D 1 HETATM 52 C C39 POV . . . K 2 132.797 104.994 121.501 1 86.91 ? C39 POV 302 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 52 #