data_6VXR # _model_server_result.job_id EL8Xfi9nmuxfgV7BPlPM0Q _model_server_result.datetime_utc '2024-12-18 01:43:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vxr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6VXR # _exptl.entry_id 6VXR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 383.352 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-7-methyl-5,8-di(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VXR _cell.length_a 52.124 _cell.length_b 70.159 _cell.length_c 102.067 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VXR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H15 F2 N5 O2' _chem_comp.formula_weight 383.352 _chem_comp.id F7D _chem_comp.mon_nstd_flag . _chem_comp.name (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-7-methyl-5,8-di(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C18 F7D sing 92 n n N4 C6 F7D doub 93 n y N4 C5 F7D sing 94 n y C19 C18 F7D doub 95 n y C19 C14 F7D sing 96 n y C13 C9 F7D trip 97 n n N5 C5 F7D sing 98 n n N5 C14 F7D sing 99 n n C6 C4 F7D sing 100 n y C18 C17 F7D sing 101 n y C9 C8 F7D sing 102 n n C5 N3 F7D doub 103 n y C14 C15 F7D doub 104 n y C8 N2 F7D sing 105 n n C4 N2 F7D sing 106 n n C4 C3 F7D doub 107 n y C17 O2 F7D sing 108 n n C17 C16 F7D doub 109 n y N3 C3 F7D sing 110 n y C15 C16 F7D sing 111 n y N2 C1 F7D sing 112 n n C3 N1 F7D sing 113 n n C16 F2 F7D sing 114 n n C1 O1 F7D doub 115 n n C1 C2 F7D sing 116 n n N1 C2 F7D sing 117 n n N1 C10 F7D sing 118 n n C2 C7 F7D sing 119 n n C10 C11 F7D sing 120 n n C11 C12 F7D trip 121 n n C6 H1 F7D sing 122 n n C7 H2 F7D sing 123 n n C7 H3 F7D sing 124 n n C7 H4 F7D sing 125 n n C8 H5 F7D sing 126 n n C8 H6 F7D sing 127 n n C10 H7 F7D sing 128 n n C10 H8 F7D sing 129 n n C12 H9 F7D sing 130 n n C13 H10 F7D sing 131 n n C2 H11 F7D sing 132 n n N5 H12 F7D sing 133 n n C15 H13 F7D sing 134 n n C19 H14 F7D sing 135 n n O2 H15 F7D sing 136 n n # _atom_sites.entry_id 6VXR _atom_sites.fract_transf_matrix[1][1] 0.019185 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F7D A 1 401 401 F7D DRG . C 3 EDO A 1 402 601 EDO EDO . D 4 HOH A 1 501 24 HOH HOH . D 4 HOH A 2 502 50 HOH HOH . D 4 HOH A 3 503 10 HOH HOH . D 4 HOH A 4 504 7 HOH HOH . D 4 HOH A 5 505 6 HOH HOH . D 4 HOH A 6 506 4 HOH HOH . D 4 HOH A 7 507 12 HOH HOH . D 4 HOH A 8 508 43 HOH HOH . D 4 HOH A 9 509 37 HOH HOH . D 4 HOH A 10 510 45 HOH HOH . D 4 HOH A 11 511 35 HOH HOH . D 4 HOH A 12 512 28 HOH HOH . D 4 HOH A 13 513 2 HOH HOH . D 4 HOH A 14 514 49 HOH HOH . D 4 HOH A 15 515 11 HOH HOH . D 4 HOH A 16 516 31 HOH HOH . D 4 HOH A 17 517 9 HOH HOH . D 4 HOH A 18 518 26 HOH HOH . D 4 HOH A 19 519 48 HOH HOH . D 4 HOH A 20 520 51 HOH HOH . D 4 HOH A 21 521 27 HOH HOH . D 4 HOH A 22 522 44 HOH HOH . D 4 HOH A 23 523 39 HOH HOH . D 4 HOH A 24 524 32 HOH HOH . D 4 HOH A 25 525 18 HOH HOH . D 4 HOH A 26 526 16 HOH HOH . D 4 HOH A 27 527 14 HOH HOH . D 4 HOH A 28 528 15 HOH HOH . D 4 HOH A 29 529 41 HOH HOH . D 4 HOH A 30 530 46 HOH HOH . D 4 HOH A 31 531 17 HOH HOH . D 4 HOH A 32 532 21 HOH HOH . D 4 HOH A 33 533 30 HOH HOH . D 4 HOH A 34 534 20 HOH HOH . D 4 HOH A 35 535 8 HOH HOH . D 4 HOH A 36 536 5 HOH HOH . D 4 HOH A 37 537 23 HOH HOH . D 4 HOH A 38 538 22 HOH HOH . D 4 HOH A 39 539 25 HOH HOH . D 4 HOH A 40 540 38 HOH HOH . D 4 HOH A 41 541 42 HOH HOH . D 4 HOH A 42 542 29 HOH HOH . D 4 HOH A 43 543 40 HOH HOH . D 4 HOH A 44 544 36 HOH HOH . D 4 HOH A 45 545 13 HOH HOH . D 4 HOH A 46 546 47 HOH HOH . D 4 HOH A 47 547 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 F7D . . . B 2 21.837 10.835 0.412 1 45.85 ? C4 F7D 401 A 1 HETATM 2 C C14 F7D . . . B 2 25.575 7.937 2.126 1 43.04 ? C14 F7D 401 A 1 HETATM 3 C C5 F7D . . . B 2 23.62 8.92 0.945 1 43.23 ? C5 F7D 401 A 1 HETATM 4 C C6 F7D . . . B 2 21.868 9.649 -0.306 1 45.41 ? C6 F7D 401 A 1 HETATM 5 C C11 F7D . . . B 2 25.04 13.097 2.492 1 48.7 ? C11 F7D 401 A 1 HETATM 6 C C7 F7D . . . B 2 20.817 12.856 3.38 1 47.16 ? C7 F7D 401 A 1 HETATM 7 C C8 F7D . . . B 2 20.15 11.8 -1.111 1 51.37 ? C8 F7D 401 A 1 HETATM 8 C C9 F7D . . . B 2 18.777 11.345 -0.89 1 54.46 ? C9 F7D 401 A 1 HETATM 9 C C10 F7D . . . B 2 23.901 12.415 3.106 1 47.41 ? C10 F7D 401 A 1 HETATM 10 C C12 F7D . . . B 2 25.973 13.632 2.02 1 51.89 ? C12 F7D 401 A 1 HETATM 11 C C13 F7D . . . B 2 17.675 10.994 -0.688 1 57.58 ? C13 F7D 401 A 1 HETATM 12 N N1 F7D . . . B 2 22.808 12.134 2.174 1 46.35 ? N1 F7D 401 A 1 HETATM 13 N N2 F7D . . . B 2 20.934 11.868 0.121 1 48.75 ? N2 F7D 401 A 1 HETATM 14 C C3 F7D . . . B 2 22.792 10.997 1.414 1 44.53 ? C3 F7D 401 A 1 HETATM 15 N N3 F7D . . . B 2 23.678 10.029 1.687 1 42.53 ? N3 F7D 401 A 1 HETATM 16 C C1 F7D . . . B 2 20.829 12.983 0.902 1 48.7 ? C1 F7D 401 A 1 HETATM 17 C C2 F7D . . . B 2 21.675 13.065 2.151 1 47.44 ? C2 F7D 401 A 1 HETATM 18 N N4 F7D . . . B 2 22.748 8.697 -0.041 1 44.19 ? N4 F7D 401 A 1 HETATM 19 O O1 F7D . . . B 2 20.083 13.901 0.603 1 50.5 ? O1 F7D 401 A 1 HETATM 20 N N5 F7D . . . B 2 24.511 7.945 1.202 1 42.88 ? N5 F7D 401 A 1 HETATM 21 C C15 F7D . . . B 2 26.229 9.119 2.438 1 44.04 ? C15 F7D 401 A 1 HETATM 22 C C16 F7D . . . B 2 27.25 9.088 3.348 1 45.57 ? C16 F7D 401 A 1 HETATM 23 C C17 F7D . . . B 2 27.647 7.917 3.962 1 43.94 ? C17 F7D 401 A 1 HETATM 24 C C18 F7D . . . B 2 26.979 6.758 3.632 1 42.88 ? C18 F7D 401 A 1 HETATM 25 C C19 F7D . . . B 2 25.952 6.746 2.728 1 43.07 ? C19 F7D 401 A 1 HETATM 26 F F1 F7D . . . B 2 27.35 5.61 4.212 1 43.1 ? F1 F7D 401 A 1 HETATM 27 O O2 F7D . . . B 2 28.653 7.897 4.847 1 48.8 ? O2 F7D 401 A 1 HETATM 28 F F2 F7D . . . B 2 27.89 10.23 3.654 1 48.62 ? F2 F7D 401 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #