data_6VXY # _model_server_result.job_id CIJKA2cSwVsYtYH8T0iWOg _model_server_result.datetime_utc '2024-12-28 01:52:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6VXY # _exptl.entry_id 6VXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 83.092 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methyl-1H-1,2,3-triazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VXY _cell.length_a 46.319 _cell.length_b 64.861 _cell.length_c 70.149 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 C CA CA . A CA 301 1_555 E O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc6 C CA CA . A CA 301 1_555 E O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C3 H5 N3' _chem_comp.formula_weight 83.092 _chem_comp.id WMH _chem_comp.mon_nstd_flag . _chem_comp.name 1-methyl-1H-1,2,3-triazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N WMH sing 376 n n N N2 WMH sing 377 n y N C1 WMH sing 378 n y N2 N1 WMH doub 379 n y C1 C2 WMH doub 380 n y N1 C2 WMH sing 381 n y C H1 WMH sing 382 n n C H2 WMH sing 383 n n C H3 WMH sing 384 n n C1 H4 WMH sing 385 n n C2 H5 WMH sing 386 n n # _atom_sites.entry_id 6VXY _atom_sites.fract_transf_matrix[1][1] 0.021589 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1 CA CA . D 4 WMH C 1 101 15 WMH WMH . E 5 HOH A 1 401 16 HOH HOH . E 5 HOH A 2 402 59 HOH HOH . E 5 HOH A 3 403 44 HOH HOH . E 5 HOH A 4 404 50 HOH HOH . E 5 HOH A 5 405 49 HOH HOH . E 5 HOH A 6 406 76 HOH HOH . E 5 HOH A 7 407 194 HOH HOH . E 5 HOH A 8 408 109 HOH HOH . E 5 HOH A 9 409 46 HOH HOH . E 5 HOH A 10 410 63 HOH HOH . E 5 HOH A 11 411 129 HOH HOH . E 5 HOH A 12 412 179 HOH HOH . E 5 HOH A 13 413 135 HOH HOH . E 5 HOH A 14 414 122 HOH HOH . E 5 HOH A 15 415 192 HOH HOH . E 5 HOH A 16 416 87 HOH HOH . E 5 HOH A 17 417 17 HOH HOH . E 5 HOH A 18 418 6 HOH HOH . E 5 HOH A 19 419 100 HOH HOH . E 5 HOH A 20 420 71 HOH HOH . E 5 HOH A 21 421 4 HOH HOH . E 5 HOH A 22 422 37 HOH HOH . E 5 HOH A 23 423 112 HOH HOH . E 5 HOH A 24 424 45 HOH HOH . E 5 HOH A 25 425 110 HOH HOH . E 5 HOH A 26 426 105 HOH HOH . E 5 HOH A 27 427 48 HOH HOH . E 5 HOH A 28 428 74 HOH HOH . E 5 HOH A 29 429 101 HOH HOH . E 5 HOH A 30 430 51 HOH HOH . E 5 HOH A 31 431 206 HOH HOH . E 5 HOH A 32 432 159 HOH HOH . E 5 HOH A 33 433 12 HOH HOH . E 5 HOH A 34 434 25 HOH HOH . E 5 HOH A 35 435 7 HOH HOH . E 5 HOH A 36 436 75 HOH HOH . E 5 HOH A 37 437 155 HOH HOH . E 5 HOH A 38 438 38 HOH HOH . E 5 HOH A 39 439 15 HOH HOH . E 5 HOH A 40 440 29 HOH HOH . E 5 HOH A 41 441 9 HOH HOH . E 5 HOH A 42 442 61 HOH HOH . E 5 HOH A 43 443 89 HOH HOH . E 5 HOH A 44 444 93 HOH HOH . E 5 HOH A 45 445 20 HOH HOH . E 5 HOH A 46 446 161 HOH HOH . E 5 HOH A 47 447 10 HOH HOH . E 5 HOH A 48 448 23 HOH HOH . E 5 HOH A 49 449 111 HOH HOH . E 5 HOH A 50 450 36 HOH HOH . E 5 HOH A 51 451 33 HOH HOH . E 5 HOH A 52 452 42 HOH HOH . E 5 HOH A 53 453 56 HOH HOH . E 5 HOH A 54 454 18 HOH HOH . E 5 HOH A 55 455 58 HOH HOH . E 5 HOH A 56 456 5 HOH HOH . E 5 HOH A 57 457 11 HOH HOH . E 5 HOH A 58 458 47 HOH HOH . E 5 HOH A 59 459 14 HOH HOH . E 5 HOH A 60 460 13 HOH HOH . E 5 HOH A 61 461 86 HOH HOH . E 5 HOH A 62 462 19 HOH HOH . E 5 HOH A 63 463 8 HOH HOH . E 5 HOH A 64 464 104 HOH HOH . E 5 HOH A 65 465 78 HOH HOH . E 5 HOH A 66 466 113 HOH HOH . E 5 HOH A 67 467 43 HOH HOH . E 5 HOH A 68 468 116 HOH HOH . E 5 HOH A 69 469 136 HOH HOH . E 5 HOH A 70 470 106 HOH HOH . E 5 HOH A 71 471 79 HOH HOH . E 5 HOH A 72 472 2 HOH HOH . E 5 HOH A 73 473 195 HOH HOH . E 5 HOH A 74 474 114 HOH HOH . E 5 HOH A 75 475 62 HOH HOH . E 5 HOH A 76 476 27 HOH HOH . E 5 HOH A 77 477 134 HOH HOH . E 5 HOH A 78 478 141 HOH HOH . E 5 HOH A 79 479 24 HOH HOH . E 5 HOH A 80 480 1 HOH HOH . E 5 HOH A 81 481 140 HOH HOH . E 5 HOH A 82 482 158 HOH HOH . E 5 HOH A 83 483 94 HOH HOH . E 5 HOH A 84 484 26 HOH HOH . E 5 HOH A 85 485 69 HOH HOH . E 5 HOH A 86 486 32 HOH HOH . E 5 HOH A 87 487 147 HOH HOH . E 5 HOH A 88 488 53 HOH HOH . E 5 HOH A 89 489 171 HOH HOH . E 5 HOH A 90 490 92 HOH HOH . E 5 HOH A 91 491 60 HOH HOH . E 5 HOH A 92 492 81 HOH HOH . E 5 HOH A 93 493 35 HOH HOH . E 5 HOH A 94 494 30 HOH HOH . E 5 HOH A 95 495 64 HOH HOH . E 5 HOH A 96 496 207 HOH HOH . E 5 HOH A 97 497 40 HOH HOH . E 5 HOH A 98 498 107 HOH HOH . E 5 HOH A 99 499 52 HOH HOH . E 5 HOH A 100 500 205 HOH HOH . E 5 HOH A 101 501 39 HOH HOH . E 5 HOH A 102 502 55 HOH HOH . E 5 HOH A 103 503 28 HOH HOH . E 5 HOH A 104 504 170 HOH HOH . E 5 HOH A 105 505 133 HOH HOH . E 5 HOH A 106 506 176 HOH HOH . E 5 HOH A 107 507 83 HOH HOH . E 5 HOH A 108 508 169 HOH HOH . E 5 HOH A 109 509 80 HOH HOH . E 5 HOH A 110 510 200 HOH HOH . E 5 HOH A 111 511 108 HOH HOH . E 5 HOH A 112 512 173 HOH HOH . E 5 HOH A 113 513 118 HOH HOH . E 5 HOH A 114 514 175 HOH HOH . E 5 HOH A 115 515 154 HOH HOH . E 5 HOH A 116 516 95 HOH HOH . E 5 HOH A 117 517 132 HOH HOH . E 5 HOH A 118 518 125 HOH HOH . E 5 HOH A 119 519 196 HOH HOH . E 5 HOH A 120 520 88 HOH HOH . E 5 HOH A 121 521 172 HOH HOH . E 5 HOH A 122 522 199 HOH HOH . E 5 HOH A 123 523 126 HOH HOH . E 5 HOH A 124 524 139 HOH HOH . E 5 HOH A 125 525 123 HOH HOH . E 5 HOH A 126 526 128 HOH HOH . E 5 HOH A 127 527 96 HOH HOH . E 5 HOH A 128 528 97 HOH HOH . E 5 HOH A 129 529 41 HOH HOH . E 5 HOH A 130 530 164 HOH HOH . E 5 HOH A 131 531 145 HOH HOH . E 5 HOH A 132 532 67 HOH HOH . E 5 HOH A 133 533 102 HOH HOH . E 5 HOH A 134 534 198 HOH HOH . F 5 HOH C 1 201 70 HOH HOH . F 5 HOH C 2 202 115 HOH HOH . F 5 HOH C 3 203 103 HOH HOH . F 5 HOH C 4 204 3 HOH HOH . F 5 HOH C 5 205 201 HOH HOH . F 5 HOH C 6 206 177 HOH HOH . F 5 HOH C 7 207 193 HOH HOH . F 5 HOH C 8 208 151 HOH HOH . F 5 HOH C 9 209 119 HOH HOH . F 5 HOH C 10 210 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N WMH . . . D 4 -15.459 -10.255 -12.146 1 26.41 ? N WMH 101 C 1 HETATM 2 C C WMH . . . D 4 -14.507 -9.181 -12.01 1 23.89 ? C WMH 101 C 1 HETATM 3 C C1 WMH . . . D 4 -15.674 -11.076 -13.283 1 27.94 ? C1 WMH 101 C 1 HETATM 4 C C2 WMH . . . D 4 -16.671 -11.986 -12.995 1 28.7 ? C2 WMH 101 C 1 HETATM 5 N N1 WMH . . . D 4 -17.058 -11.764 -11.714 1 29.39 ? N1 WMH 101 C 1 HETATM 6 N N2 WMH . . . D 4 -16.33 -10.713 -11.188 1 28.7 ? N2 WMH 101 C 1 HETATM 7 H H1 WMH . . . D 4 -14.844 -8.533 -11.401 1 28.7 ? H1 WMH 101 C 1 HETATM 8 H H2 WMH . . . D 4 -14.363 -8.775 -12.858 1 28.7 ? H2 WMH 101 C 1 HETATM 9 H H5 WMH . . . D 4 -17.013 -12.63 -13.57 1 34.47 ? H5 WMH 101 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #