data_6VXY
#
_model_server_result.job_id            7E89SOotkA-c9FrgCfsFRw 
_model_server_result.datetime_utc      '2024-11-04 20:34:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    6VXY 
#
_exptl.entry_id    6VXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VXY 
_cell.length_a            46.319 
_cell.length_b            64.861 
_cell.length_c            70.149 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc2 A O ASN 54 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc3 A O VAL 57 A VAL 75 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc5 C CA CA . A CA 301 1_555 E O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc6 C CA CA . A CA 301 1_555 E O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6VXY 
_atom_sites.fract_transf_matrix[1][1]    0.021589 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015418 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014255 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 301 1 CA CA . 
D 4 WMH C 1 101 15 WMH WMH . 
E 5 HOH A 1 401 16 HOH HOH . 
E 5 HOH A 2 402 59 HOH HOH . 
E 5 HOH A 3 403 44 HOH HOH . 
E 5 HOH A 4 404 50 HOH HOH . 
E 5 HOH A 5 405 49 HOH HOH . 
E 5 HOH A 6 406 76 HOH HOH . 
E 5 HOH A 7 407 194 HOH HOH . 
E 5 HOH A 8 408 109 HOH HOH . 
E 5 HOH A 9 409 46 HOH HOH . 
E 5 HOH A 10 410 63 HOH HOH . 
E 5 HOH A 11 411 129 HOH HOH . 
E 5 HOH A 12 412 179 HOH HOH . 
E 5 HOH A 13 413 135 HOH HOH . 
E 5 HOH A 14 414 122 HOH HOH . 
E 5 HOH A 15 415 192 HOH HOH . 
E 5 HOH A 16 416 87 HOH HOH . 
E 5 HOH A 17 417 17 HOH HOH . 
E 5 HOH A 18 418 6 HOH HOH . 
E 5 HOH A 19 419 100 HOH HOH . 
E 5 HOH A 20 420 71 HOH HOH . 
E 5 HOH A 21 421 4 HOH HOH . 
E 5 HOH A 22 422 37 HOH HOH . 
E 5 HOH A 23 423 112 HOH HOH . 
E 5 HOH A 24 424 45 HOH HOH . 
E 5 HOH A 25 425 110 HOH HOH . 
E 5 HOH A 26 426 105 HOH HOH . 
E 5 HOH A 27 427 48 HOH HOH . 
E 5 HOH A 28 428 74 HOH HOH . 
E 5 HOH A 29 429 101 HOH HOH . 
E 5 HOH A 30 430 51 HOH HOH . 
E 5 HOH A 31 431 206 HOH HOH . 
E 5 HOH A 32 432 159 HOH HOH . 
E 5 HOH A 33 433 12 HOH HOH . 
E 5 HOH A 34 434 25 HOH HOH . 
E 5 HOH A 35 435 7 HOH HOH . 
E 5 HOH A 36 436 75 HOH HOH . 
E 5 HOH A 37 437 155 HOH HOH . 
E 5 HOH A 38 438 38 HOH HOH . 
E 5 HOH A 39 439 15 HOH HOH . 
E 5 HOH A 40 440 29 HOH HOH . 
E 5 HOH A 41 441 9 HOH HOH . 
E 5 HOH A 42 442 61 HOH HOH . 
E 5 HOH A 43 443 89 HOH HOH . 
E 5 HOH A 44 444 93 HOH HOH . 
E 5 HOH A 45 445 20 HOH HOH . 
E 5 HOH A 46 446 161 HOH HOH . 
E 5 HOH A 47 447 10 HOH HOH . 
E 5 HOH A 48 448 23 HOH HOH . 
E 5 HOH A 49 449 111 HOH HOH . 
E 5 HOH A 50 450 36 HOH HOH . 
E 5 HOH A 51 451 33 HOH HOH . 
E 5 HOH A 52 452 42 HOH HOH . 
E 5 HOH A 53 453 56 HOH HOH . 
E 5 HOH A 54 454 18 HOH HOH . 
E 5 HOH A 55 455 58 HOH HOH . 
E 5 HOH A 56 456 5 HOH HOH . 
E 5 HOH A 57 457 11 HOH HOH . 
E 5 HOH A 58 458 47 HOH HOH . 
E 5 HOH A 59 459 14 HOH HOH . 
E 5 HOH A 60 460 13 HOH HOH . 
E 5 HOH A 61 461 86 HOH HOH . 
E 5 HOH A 62 462 19 HOH HOH . 
E 5 HOH A 63 463 8 HOH HOH . 
E 5 HOH A 64 464 104 HOH HOH . 
E 5 HOH A 65 465 78 HOH HOH . 
E 5 HOH A 66 466 113 HOH HOH . 
E 5 HOH A 67 467 43 HOH HOH . 
E 5 HOH A 68 468 116 HOH HOH . 
E 5 HOH A 69 469 136 HOH HOH . 
E 5 HOH A 70 470 106 HOH HOH . 
E 5 HOH A 71 471 79 HOH HOH . 
E 5 HOH A 72 472 2 HOH HOH . 
E 5 HOH A 73 473 195 HOH HOH . 
E 5 HOH A 74 474 114 HOH HOH . 
E 5 HOH A 75 475 62 HOH HOH . 
E 5 HOH A 76 476 27 HOH HOH . 
E 5 HOH A 77 477 134 HOH HOH . 
E 5 HOH A 78 478 141 HOH HOH . 
E 5 HOH A 79 479 24 HOH HOH . 
E 5 HOH A 80 480 1 HOH HOH . 
E 5 HOH A 81 481 140 HOH HOH . 
E 5 HOH A 82 482 158 HOH HOH . 
E 5 HOH A 83 483 94 HOH HOH . 
E 5 HOH A 84 484 26 HOH HOH . 
E 5 HOH A 85 485 69 HOH HOH . 
E 5 HOH A 86 486 32 HOH HOH . 
E 5 HOH A 87 487 147 HOH HOH . 
E 5 HOH A 88 488 53 HOH HOH . 
E 5 HOH A 89 489 171 HOH HOH . 
E 5 HOH A 90 490 92 HOH HOH . 
E 5 HOH A 91 491 60 HOH HOH . 
E 5 HOH A 92 492 81 HOH HOH . 
E 5 HOH A 93 493 35 HOH HOH . 
E 5 HOH A 94 494 30 HOH HOH . 
E 5 HOH A 95 495 64 HOH HOH . 
E 5 HOH A 96 496 207 HOH HOH . 
E 5 HOH A 97 497 40 HOH HOH . 
E 5 HOH A 98 498 107 HOH HOH . 
E 5 HOH A 99 499 52 HOH HOH . 
E 5 HOH A 100 500 205 HOH HOH . 
E 5 HOH A 101 501 39 HOH HOH . 
E 5 HOH A 102 502 55 HOH HOH . 
E 5 HOH A 103 503 28 HOH HOH . 
E 5 HOH A 104 504 170 HOH HOH . 
E 5 HOH A 105 505 133 HOH HOH . 
E 5 HOH A 106 506 176 HOH HOH . 
E 5 HOH A 107 507 83 HOH HOH . 
E 5 HOH A 108 508 169 HOH HOH . 
E 5 HOH A 109 509 80 HOH HOH . 
E 5 HOH A 110 510 200 HOH HOH . 
E 5 HOH A 111 511 108 HOH HOH . 
E 5 HOH A 112 512 173 HOH HOH . 
E 5 HOH A 113 513 118 HOH HOH . 
E 5 HOH A 114 514 175 HOH HOH . 
E 5 HOH A 115 515 154 HOH HOH . 
E 5 HOH A 116 516 95 HOH HOH . 
E 5 HOH A 117 517 132 HOH HOH . 
E 5 HOH A 118 518 125 HOH HOH . 
E 5 HOH A 119 519 196 HOH HOH . 
E 5 HOH A 120 520 88 HOH HOH . 
E 5 HOH A 121 521 172 HOH HOH . 
E 5 HOH A 122 522 199 HOH HOH . 
E 5 HOH A 123 523 126 HOH HOH . 
E 5 HOH A 124 524 139 HOH HOH . 
E 5 HOH A 125 525 123 HOH HOH . 
E 5 HOH A 126 526 128 HOH HOH . 
E 5 HOH A 127 527 96 HOH HOH . 
E 5 HOH A 128 528 97 HOH HOH . 
E 5 HOH A 129 529 41 HOH HOH . 
E 5 HOH A 130 530 164 HOH HOH . 
E 5 HOH A 131 531 145 HOH HOH . 
E 5 HOH A 132 532 67 HOH HOH . 
E 5 HOH A 133 533 102 HOH HOH . 
E 5 HOH A 134 534 198 HOH HOH . 
F 5 HOH C 1 201 70 HOH HOH . 
F 5 HOH C 2 202 115 HOH HOH . 
F 5 HOH C 3 203 103 HOH HOH . 
F 5 HOH C 4 204 3 HOH HOH . 
F 5 HOH C 5 205 201 HOH HOH . 
F 5 HOH C 6 206 177 HOH HOH . 
F 5 HOH C 7 207 193 HOH HOH . 
F 5 HOH C 8 208 151 HOH HOH . 
F 5 HOH C 9 209 119 HOH HOH . 
F 5 HOH C 10 210 90 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -7.298 
_atom_site.Cartn_y               16.962 
_atom_site.Cartn_z               -17.73 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.91 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#