data_6VYI # _model_server_result.job_id IjPMJhy9JRLBjTvU_GtWHw _model_server_result.datetime_utc '2024-11-23 05:57:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 6VYI # _exptl.entry_id 6VYI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VYI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 6VYI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6OU A 1 501 1 6OU PPE . D 2 6OU A 1 502 2 6OU PPE . E 2 6OU A 1 503 3 6OU PPE . F 2 6OU B 1 501 4 6OU PPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6OU . . . F 2 106.604 99.87 116.303 1 42.07 ? C01 6OU 501 B 1 HETATM 2 C C02 6OU . . . F 2 107.145 101.148 115.717 1 42.07 ? C02 6OU 501 B 1 HETATM 3 C C03 6OU . . . F 2 106.68 101.385 114.302 1 42.07 ? C03 6OU 501 B 1 HETATM 4 C C04 6OU . . . F 2 107.39 102.514 113.583 1 42.07 ? C04 6OU 501 B 1 HETATM 5 C C05 6OU . . . F 2 107.042 102.593 112.111 1 42.07 ? C05 6OU 501 B 1 HETATM 6 C C06 6OU . . . F 2 105.634 103.077 111.819 1 42.07 ? C06 6OU 501 B 1 HETATM 7 C C07 6OU . . . F 2 105.051 102.467 110.565 1 42.07 ? C07 6OU 501 B 1 HETATM 8 C C08 6OU . . . F 2 103.797 103.142 110.04 1 42.07 ? C08 6OU 501 B 1 HETATM 9 C C09 6OU . . . F 2 103.207 102.429 108.835 1 42.07 ? C09 6OU 501 B 1 HETATM 10 C C10 6OU . . . F 2 102.228 103.242 108.007 1 42.07 ? C10 6OU 501 B 1 HETATM 11 C C11 6OU . . . F 2 101.787 102.53 106.746 1 42.07 ? C11 6OU 501 B 1 HETATM 12 C C12 6OU . . . F 2 101.024 103.391 105.764 1 42.07 ? C12 6OU 501 B 1 HETATM 13 C C13 6OU . . . F 2 99.522 103.288 105.864 1 42.07 ? C13 6OU 501 B 1 HETATM 14 C C14 6OU . . . F 2 98.831 103.049 104.528 1 42.07 ? C14 6OU 501 B 1 HETATM 15 C C15 6OU . . . F 2 99.179 101.708 103.891 1 42.07 ? C15 6OU 501 B 1 HETATM 16 C C16 6OU . . . F 2 98.786 100.548 104.751 1 42.07 ? C16 6OU 501 B 1 HETATM 17 O O17 6OU . . . F 2 97.72 100.003 104.727 1 42.07 ? O17 6OU 501 B 1 HETATM 18 O O18 6OU . . . F 2 99.773 100.21 105.576 1 42.07 ? O18 6OU 501 B 1 HETATM 19 C C19 6OU . . . F 2 99.48 99.261 106.627 1 42.07 ? C19 6OU 501 B 1 HETATM 20 C C20 6OU . . . F 2 100.803 98.763 107.138 1 42.07 ? C20 6OU 501 B 1 HETATM 21 C C21 6OU . . . F 2 101.191 97.495 106.439 1 42.07 ? C21 6OU 501 B 1 HETATM 22 O O22 6OU . . . F 2 102.38 97.71 105.658 1 42.07 ? O22 6OU 501 B 1 HETATM 23 P P23 6OU . . . F 2 103.718 96.901 105.563 1 42.07 ? P23 6OU 501 B 1 HETATM 24 O O24 6OU . . . F 2 104.808 97.938 105.585 1 42.07 ? O24 6OU 501 B 1 HETATM 25 O O25 6OU . . . F 2 103.804 95.932 106.669 1 42.07 ? O25 6OU 501 B 1 HETATM 26 O O26 6OU . . . F 2 103.755 96.171 104.144 1 42.07 ? O26 6OU 501 B 1 HETATM 27 C C27 6OU . . . F 2 104.798 96.226 103.139 1 42.07 ? C27 6OU 501 B 1 HETATM 28 C C28 6OU . . . F 2 105.525 94.863 102.975 1 42.07 ? C28 6OU 501 B 1 HETATM 29 N N29 6OU . . . F 2 104.735 94.025 102.069 1 42.07 ? N29 6OU 501 B 1 HETATM 30 O O30 6OU . . . F 2 100.703 98.439 108.559 1 42.07 ? O30 6OU 501 B 1 HETATM 31 C C31 6OU . . . F 2 100.769 99.447 109.442 1 42.07 ? C31 6OU 501 B 1 HETATM 32 O O32 6OU . . . F 2 100.728 100.605 109.141 1 42.07 ? O32 6OU 501 B 1 HETATM 33 C C33 6OU . . . F 2 100.906 98.934 110.839 1 42.07 ? C33 6OU 501 B 1 HETATM 34 C C34 6OU . . . F 2 100.691 99.986 111.915 1 42.07 ? C34 6OU 501 B 1 HETATM 35 C C35 6OU . . . F 2 101.938 100.774 112.224 1 42.07 ? C35 6OU 501 B 1 HETATM 36 C C36 6OU . . . F 2 101.995 101.285 113.647 1 42.07 ? C36 6OU 501 B 1 HETATM 37 C C37 6OU . . . F 2 102.036 100.189 114.694 1 42.07 ? C37 6OU 501 B 1 HETATM 38 C C38 6OU . . . F 2 102.085 100.71 116.12 1 42.07 ? C38 6OU 501 B 1 HETATM 39 C C39 6OU . . . F 2 103.352 101.487 116.465 1 42.07 ? C39 6OU 501 B 1 HETATM 40 C C40 6OU . . . F 2 103.221 102.327 117.697 1 42.07 ? C40 6OU 501 B 1 HETATM 41 C C41 6OU . . . F 2 103.897 102.195 118.824 1 42.07 ? C41 6OU 501 B 1 HETATM 42 C C42 6OU . . . F 2 104.944 101.173 119.121 1 42.07 ? C42 6OU 501 B 1 HETATM 43 C C43 6OU . . . F 2 106.319 101.773 119.418 1 42.07 ? C43 6OU 501 B 1 HETATM 44 C C44 6OU . . . F 2 106.478 102.344 120.817 1 42.07 ? C44 6OU 501 B 1 HETATM 45 C C45 6OU . . . F 2 107.917 102.691 121.174 1 42.07 ? C45 6OU 501 B 1 HETATM 46 C C46 6OU . . . F 2 108.143 102.918 122.658 1 42.07 ? C46 6OU 501 B 1 HETATM 47 C C47 6OU . . . F 2 107.52 104.192 123.195 1 42.07 ? C47 6OU 501 B 1 HETATM 48 C C48 6OU . . . F 2 108.334 105.432 122.913 1 42.07 ? C48 6OU 501 B 1 HETATM 49 C C49 6OU . . . F 2 109.658 105.441 123.634 1 42.07 ? C49 6OU 501 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #