data_6VYI # _model_server_result.job_id 8sByY3F96N566Dp9_Xf8Ag _model_server_result.datetime_utc '2024-11-04 18:05:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 6VYI # _exptl.entry_id 6VYI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VYI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 6VYI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6OU A 1 501 1 6OU PPE . D 2 6OU A 1 502 2 6OU PPE . E 2 6OU A 1 503 3 6OU PPE . F 2 6OU B 1 501 4 6OU PPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6OU . . . E 2 101.938 105.819 123.747 1 42.93 ? C01 6OU 503 A 1 HETATM 2 C C02 6OU . . . E 2 102.757 106.405 122.624 1 42.93 ? C02 6OU 503 A 1 HETATM 3 C C03 6OU . . . E 2 102.323 107.803 122.238 1 42.93 ? C03 6OU 503 A 1 HETATM 4 C C04 6OU . . . E 2 103.066 108.384 121.046 1 42.93 ? C04 6OU 503 A 1 HETATM 5 C C05 6OU . . . E 2 104.57 108.472 121.24 1 42.93 ? C05 6OU 503 A 1 HETATM 6 C C06 6OU . . . E 2 105.309 109.156 120.097 1 42.93 ? C06 6OU 503 A 1 HETATM 7 C C07 6OU . . . E 2 106.809 109.268 120.324 1 42.93 ? C07 6OU 503 A 1 HETATM 8 C C08 6OU . . . E 2 107.545 110.169 119.338 1 42.93 ? C08 6OU 503 A 1 HETATM 9 C C09 6OU . . . E 2 107.591 109.662 117.905 1 42.93 ? C09 6OU 503 A 1 HETATM 10 C C10 6OU . . . E 2 108.469 110.505 116.991 1 42.93 ? C10 6OU 503 A 1 HETATM 11 C C11 6OU . . . E 2 108.418 110.094 115.531 1 42.93 ? C11 6OU 503 A 1 HETATM 12 C C12 6OU . . . E 2 109.41 110.812 114.632 1 42.93 ? C12 6OU 503 A 1 HETATM 13 C C13 6OU . . . E 2 109.107 110.636 113.158 1 42.93 ? C13 6OU 503 A 1 HETATM 14 C C14 6OU . . . E 2 110.191 111.124 112.22 1 42.93 ? C14 6OU 503 A 1 HETATM 15 C C15 6OU . . . E 2 109.648 111.451 110.837 1 42.93 ? C15 6OU 503 A 1 HETATM 16 C C16 6OU . . . E 2 110.675 111.331 109.756 1 42.93 ? C16 6OU 503 A 1 HETATM 17 O O17 6OU . . . E 2 111.536 110.498 109.735 1 42.93 ? O17 6OU 503 A 1 HETATM 18 O O18 6OU . . . E 2 110.515 112.257 108.808 1 42.93 ? O18 6OU 503 A 1 HETATM 19 C C19 6OU . . . E 2 111.496 112.272 107.744 1 42.93 ? C19 6OU 503 A 1 HETATM 20 C C20 6OU . . . E 2 110.822 112.554 106.43 1 42.93 ? C20 6OU 503 A 1 HETATM 21 C C21 6OU . . . E 2 109.378 112.909 106.647 1 42.93 ? C21 6OU 503 A 1 HETATM 22 O O22 6OU . . . E 2 108.882 113.678 105.534 1 42.93 ? O22 6OU 503 A 1 HETATM 23 P P23 6OU . . . E 2 107.514 114.428 105.334 1 42.93 ? P23 6OU 503 A 1 HETATM 24 O O24 6OU . . . E 2 106.477 113.36 105.56 1 42.93 ? O24 6OU 503 A 1 HETATM 25 O O25 6OU . . . E 2 107.395 115.543 106.291 1 42.93 ? O25 6OU 503 A 1 HETATM 26 O O26 6OU . . . E 2 107.37 114.913 103.816 1 42.93 ? O26 6OU 503 A 1 HETATM 27 C C27 6OU . . . E 2 106.188 115.43 103.152 1 42.93 ? C27 6OU 503 A 1 HETATM 28 C C28 6OU . . . E 2 106.503 116.75 102.376 1 42.93 ? C28 6OU 503 A 1 HETATM 29 N N29 6OU . . . E 2 105.25 117.245 101.788 1 42.93 ? N29 6OU 503 A 1 HETATM 30 O O30 6OU . . . E 2 110.851 111.342 105.606 1 42.93 ? O30 6OU 503 A 1 HETATM 31 C C31 6OU . . . E 2 111.989 111.023 104.96 1 42.93 ? C31 6OU 503 A 1 HETATM 32 O O32 6OU . . . E 2 113.011 111.641 105.057 1 42.93 ? O32 6OU 503 A 1 HETATM 33 C C33 6OU . . . E 2 111.807 109.803 104.107 1 42.93 ? C33 6OU 503 A 1 HETATM 34 C C34 6OU . . . E 2 112.198 108.518 104.822 1 42.93 ? C34 6OU 503 A 1 HETATM 35 C C35 6OU . . . E 2 111.412 108.289 106.105 1 42.93 ? C35 6OU 503 A 1 HETATM 36 C C36 6OU . . . E 2 109.991 107.845 105.874 1 42.93 ? C36 6OU 503 A 1 HETATM 37 C C37 6OU . . . E 2 108.962 108.493 106.776 1 42.93 ? C37 6OU 503 A 1 HETATM 38 C C38 6OU . . . E 2 109.079 108.129 108.239 1 42.93 ? C38 6OU 503 A 1 HETATM 39 C C39 6OU . . . E 2 107.911 108.632 109.084 1 42.93 ? C39 6OU 503 A 1 HETATM 40 C C40 6OU . . . E 2 108.063 108.346 110.542 1 42.93 ? C40 6OU 503 A 1 HETATM 41 C C41 6OU . . . E 2 107.109 107.992 111.381 1 42.93 ? C41 6OU 503 A 1 HETATM 42 C C42 6OU . . . E 2 105.669 107.794 111.056 1 42.93 ? C42 6OU 503 A 1 HETATM 43 C C43 6OU . . . E 2 104.801 108.949 111.529 1 42.93 ? C43 6OU 503 A 1 HETATM 44 C C44 6OU . . . E 2 103.658 108.528 112.434 1 42.93 ? C44 6OU 503 A 1 HETATM 45 C C45 6OU . . . E 2 103.968 108.602 113.915 1 42.93 ? C45 6OU 503 A 1 HETATM 46 C C46 6OU . . . E 2 104.332 109.998 114.374 1 42.93 ? C46 6OU 503 A 1 HETATM 47 C C47 6OU . . . E 2 104.402 110.179 115.877 1 42.93 ? C47 6OU 503 A 1 HETATM 48 C C48 6OU . . . E 2 104.766 111.591 116.28 1 42.93 ? C48 6OU 503 A 1 HETATM 49 C C49 6OU . . . E 2 104.801 111.807 117.764 1 42.93 ? C49 6OU 503 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 49 #