data_6VYK
#
_model_server_result.job_id            YlgD0UPdFuj530k1rvWzuA 
_model_server_result.datetime_utc      '2024-11-23 21:15:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vyk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    6VYK 
#
_exptl.entry_id    6VYK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              787.121 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C44 H85 N O8 P 1' 
_chem_comp.formula_weight    787.121 
_chem_comp.id                PCW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PCW sing 201 n n 
C1 O3P PCW sing 202 n n 
C1 H11 PCW sing 203 n n 
C1 H12 PCW sing 204 n n 
C2 C3 PCW sing 205 n n 
C2 O2 PCW sing 206 n n 
C2 H2 PCW sing 207 n n 
C3 O3 PCW sing 208 n n 
C3 H31 PCW sing 209 n n 
C3 H32 PCW sing 210 n n 
C4 C5 PCW sing 211 n n 
C4 O4P PCW sing 212 n n 
C4 H41 PCW sing 213 n n 
C4 H42 PCW sing 214 n n 
C5 N PCW sing 215 n n 
C5 H51 PCW sing 216 n n 
C5 H52 PCW sing 217 n n 
C6 N PCW sing 218 n n 
C6 H61 PCW sing 219 n n 
C6 H62 PCW sing 220 n n 
C6 H63 PCW sing 221 n n 
C7 N PCW sing 222 n n 
C7 H71 PCW sing 223 n n 
C7 H72 PCW sing 224 n n 
C7 H73 PCW sing 225 n n 
C8 N PCW sing 226 n n 
C8 H81 PCW sing 227 n n 
C8 H82 PCW sing 228 n n 
C8 H83 PCW sing 229 n n 
C11 C12 PCW sing 230 n n 
C11 O3 PCW sing 231 n n 
C11 O11 PCW doub 232 n n 
C12 C13 PCW sing 233 n n 
C12 H121 PCW sing 234 n n 
C12 H122 PCW sing 235 n n 
C13 C14 PCW sing 236 n n 
C13 H131 PCW sing 237 n n 
C13 H132 PCW sing 238 n n 
C14 C15 PCW sing 239 n n 
C14 H141 PCW sing 240 n n 
C14 H142 PCW sing 241 n n 
C15 C16 PCW sing 242 n n 
C15 H151 PCW sing 243 n n 
C15 H152 PCW sing 244 n n 
C16 C17 PCW sing 245 n n 
C16 H161 PCW sing 246 n n 
C16 H162 PCW sing 247 n n 
C17 C18 PCW sing 248 n n 
C17 H171 PCW sing 249 n n 
C17 H172 PCW sing 250 n n 
C18 C19 PCW sing 251 n n 
C18 H181 PCW sing 252 n n 
C18 H182 PCW sing 253 n n 
C19 C20 PCW doub 254 z n 
C19 H19 PCW sing 255 n n 
C20 C21 PCW sing 256 n n 
C20 H20 PCW sing 257 n n 
C21 C22 PCW sing 258 n n 
C21 H211 PCW sing 259 n n 
C21 H212 PCW sing 260 n n 
C22 C23 PCW sing 261 n n 
C22 H221 PCW sing 262 n n 
C22 H222 PCW sing 263 n n 
C23 C24 PCW sing 264 n n 
C23 H231 PCW sing 265 n n 
C23 H232 PCW sing 266 n n 
C24 C25 PCW sing 267 n n 
C24 H241 PCW sing 268 n n 
C24 H242 PCW sing 269 n n 
C25 C26 PCW sing 270 n n 
C25 H251 PCW sing 271 n n 
C25 H252 PCW sing 272 n n 
C26 C27 PCW sing 273 n n 
C26 H261 PCW sing 274 n n 
C26 H262 PCW sing 275 n n 
C27 C28 PCW sing 276 n n 
C27 H271 PCW sing 277 n n 
C27 H272 PCW sing 278 n n 
C28 H281 PCW sing 279 n n 
C28 H282 PCW sing 280 n n 
C28 H283 PCW sing 281 n n 
C31 C32 PCW sing 282 n n 
C31 O2 PCW sing 283 n n 
C31 O31 PCW doub 284 n n 
C32 C33 PCW sing 285 n n 
C32 H321 PCW sing 286 n n 
C32 H322 PCW sing 287 n n 
C33 C34 PCW sing 288 n n 
C33 H331 PCW sing 289 n n 
C33 H332 PCW sing 290 n n 
C34 C35 PCW sing 291 n n 
C34 H341 PCW sing 292 n n 
C34 H342 PCW sing 293 n n 
C35 C36 PCW sing 294 n n 
C35 H351 PCW sing 295 n n 
C35 H352 PCW sing 296 n n 
C36 C37 PCW sing 297 n n 
C36 H361 PCW sing 298 n n 
C36 H362 PCW sing 299 n n 
C37 C38 PCW sing 300 n n 
C37 H371 PCW sing 301 n n 
C37 H372 PCW sing 302 n n 
C38 C39 PCW sing 303 n n 
C38 H381 PCW sing 304 n n 
C38 H382 PCW sing 305 n n 
C39 C40 PCW doub 306 z n 
C39 H39 PCW sing 307 n n 
C40 C41 PCW sing 308 n n 
C40 H40 PCW sing 309 n n 
C41 C42 PCW sing 310 n n 
C41 H411 PCW sing 311 n n 
C41 H412 PCW sing 312 n n 
C42 C43 PCW sing 313 n n 
C42 H421 PCW sing 314 n n 
C42 H422 PCW sing 315 n n 
C43 C44 PCW sing 316 n n 
C43 H431 PCW sing 317 n n 
C43 H432 PCW sing 318 n n 
C44 C45 PCW sing 319 n n 
C44 H441 PCW sing 320 n n 
C44 H442 PCW sing 321 n n 
C45 C46 PCW sing 322 n n 
C45 H451 PCW sing 323 n n 
C45 H452 PCW sing 324 n n 
C46 C47 PCW sing 325 n n 
C46 H461 PCW sing 326 n n 
C46 H462 PCW sing 327 n n 
C47 C48 PCW sing 328 n n 
C47 H471 PCW sing 329 n n 
C47 H472 PCW sing 330 n n 
C48 H481 PCW sing 331 n n 
C48 H482 PCW sing 332 n n 
C48 H483 PCW sing 333 n n 
O1P P PCW sing 334 n n 
O1P H1P PCW sing 335 n n 
O2P P PCW doub 336 n n 
O3P P PCW sing 337 n n 
O4P P PCW sing 338 n n 
#
_atom_sites.entry_id                     6VYK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 PCW A 1 301 407 PCW PCW . 
I 2 PCW B 1 301 406 PCW PCW . 
J 2 PCW C 1 301 404 PCW PCW . 
K 2 PCW C 1 302 405 PCW PCW . 
L 2 PCW D 1 301 403 PCW PCW . 
M 2 PCW F 1 401 401 PCW PCW . 
N 2 PCW F 1 402 402 PCW PCW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PCW . . . J 2 104.798 118.821 159.646 1 60.48 ? C1 PCW 301 C 1 
HETATM 2 C C2 PCW . . . J 2 105.649 119.945 159.06 1 60.48 ? C2 PCW 301 C 1 
HETATM 3 C C3 PCW . . . J 2 104.812 120.894 158.181 1 60.48 ? C3 PCW 301 C 1 
HETATM 4 C C4 PCW . . . J 2 106.506 115.141 158.277 1 60.48 ? C4 PCW 301 C 1 
HETATM 5 C C5 PCW . . . J 2 107.162 113.751 157.986 1 60.48 ? C5 PCW 301 C 1 
HETATM 6 C C6 PCW . . . J 2 109.283 114.036 158.196 1 60.48 ? C6 PCW 301 C 1 
HETATM 7 C C7 PCW . . . J 2 109.455 112.958 156.39 1 60.48 ? C7 PCW 301 C 1 
HETATM 8 C C8 PCW . . . J 2 107.445 113.273 155.904 1 60.48 ? C8 PCW 301 C 1 
HETATM 9 C C11 PCW . . . J 2 105.096 122.49 156.396 1 60.48 ? C11 PCW 301 C 1 
HETATM 10 C C12 PCW . . . J 2 105.974 123.02 155.225 1 60.48 ? C12 PCW 301 C 1 
HETATM 11 C C13 PCW . . . J 2 106.086 124.565 155.316 1 60.48 ? C13 PCW 301 C 1 
HETATM 12 C C14 PCW . . . J 2 107.025 125.088 154.182 1 60.48 ? C14 PCW 301 C 1 
HETATM 13 C C15 PCW . . . J 2 106.18 125.314 152.904 1 60.48 ? C15 PCW 301 C 1 
HETATM 14 C C16 PCW . . . J 2 107.07 125.172 151.629 1 60.48 ? C16 PCW 301 C 1 
HETATM 15 C C17 PCW . . . J 2 106.172 125.479 150.389 1 60.48 ? C17 PCW 301 C 1 
HETATM 16 C C18 PCW . . . J 2 106.447 124.525 149.163 1 60.48 ? C18 PCW 301 C 1 
HETATM 17 C C19 PCW . . . J 2 105.129 124.412 148.342 1 60.48 ? C19 PCW 301 C 1 
HETATM 18 C C20 PCW . . . J 2 104.964 124.755 147.015 1 60.48 ? C20 PCW 301 C 1 
HETATM 19 C C21 PCW . . . J 2 106.069 125.327 146.072 1 60.48 ? C21 PCW 301 C 1 
HETATM 20 C C22 PCW . . . J 2 106.233 124.358 144.834 1 60.48 ? C22 PCW 301 C 1 
HETATM 21 C C23 PCW . . . J 2 107.65 124.562 144.197 1 60.48 ? C23 PCW 301 C 1 
HETATM 22 C C24 PCW . . . J 2 107.966 123.417 143.178 1 60.48 ? C24 PCW 301 C 1 
HETATM 23 C C25 PCW . . . J 2 109.495 123.08 143.278 1 60.48 ? C25 PCW 301 C 1 
HETATM 24 C C26 PCW . . . J 2 109.946 122.226 142.052 1 60.48 ? C26 PCW 301 C 1 
HETATM 25 C C27 PCW . . . J 2 111.418 122.539 141.655 1 60.48 ? C27 PCW 301 C 1 
HETATM 26 C C28 PCW . . . J 2 111.66 122.023 140.228 1 60.48 ? C28 PCW 301 C 1 
HETATM 27 C C31 PCW . . . J 2 107.589 120.475 160.33 1 60.48 ? C31 PCW 301 C 1 
HETATM 28 C C32 PCW . . . J 2 108.478 121.717 160.614 1 60.48 ? C32 PCW 301 C 1 
HETATM 29 C C33 PCW . . . J 2 108.135 122.801 159.558 1 60.48 ? C33 PCW 301 C 1 
HETATM 30 C C34 PCW . . . J 2 109.331 123.789 159.405 1 60.48 ? C34 PCW 301 C 1 
HETATM 31 C C35 PCW . . . J 2 109.069 124.744 158.217 1 60.48 ? C35 PCW 301 C 1 
HETATM 32 C C36 PCW . . . J 2 110.268 125.715 158.105 1 60.48 ? C36 PCW 301 C 1 
HETATM 33 C C37 PCW . . . J 2 110.077 126.669 156.892 1 60.48 ? C37 PCW 301 C 1 
HETATM 34 C C38 PCW . . . J 2 110.698 126.045 155.604 1 60.48 ? C38 PCW 301 C 1 
HETATM 35 C C39 PCW . . . J 2 112.231 126.091 155.685 1 60.48 ? C39 PCW 301 C 1 
HETATM 36 C C40 PCW . . . J 2 113.054 125.395 154.849 1 60.48 ? C40 PCW 301 C 1 
HETATM 37 C C41 PCW . . . J 2 112.565 124.475 153.701 1 60.48 ? C41 PCW 301 C 1 
HETATM 38 C C42 PCW . . . J 2 112.864 125.173 152.353 1 60.48 ? C42 PCW 301 C 1 
HETATM 39 C C43 PCW . . . J 2 112.032 124.498 151.24 1 60.48 ? C43 PCW 301 C 1 
HETATM 40 C C44 PCW . . . J 2 112.477 125.009 149.836 1 60.48 ? C44 PCW 301 C 1 
HETATM 41 C C45 PCW . . . J 2 111.392 125.942 149.226 1 60.48 ? C45 PCW 301 C 1 
HETATM 42 C C46 PCW . . . J 2 111.642 126.125 147.707 1 60.48 ? C46 PCW 301 C 1 
HETATM 43 C C47 PCW . . . J 2 110.36 126.652 147.031 1 60.48 ? C47 PCW 301 C 1 
HETATM 44 C C48 PCW . . . J 2 110.556 126.648 145.506 1 60.48 ? C48 PCW 301 C 1 
HETATM 45 N N PCW . . . J 2 108.36 113.913 156.968 1 60.48 ? N PCW 301 C 1 
HETATM 46 O O2 PCW . . . J 2 106.189 120.675 160.121 1 60.48 ? O2 PCW 301 C 1 
HETATM 47 O O3 PCW . . . J 2 105.693 121.777 157.485 1 60.48 ? O3 PCW 301 C 1 
HETATM 48 O O11 PCW . . . J 2 103.93 122.692 156.38 1 60.48 ? O11 PCW 301 C 1 
HETATM 49 O O31 PCW . . . J 2 108.063 119.386 160.301 1 60.48 ? O31 PCW 301 C 1 
HETATM 50 O O1P PCW . . . J 2 104.995 115.872 161.786 1 60.48 -1 O1P PCW 301 C 1 
HETATM 51 O O2P PCW . . . J 2 103.916 116.023 159.583 1 60.48 ? O2P PCW 301 C 1 
HETATM 52 O O3P PCW . . . J 2 105.663 117.866 160.255 1 60.48 ? O3P PCW 301 C 1 
HETATM 53 O O4P PCW . . . J 2 106.406 115.287 159.693 1 60.48 ? O4P PCW 301 C 1 
HETATM 54 P P PCW . . . J 2 105.203 116.25 160.341 1 60.48 ? P PCW 301 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           54 
#