data_6VYK # _model_server_result.job_id 6BZX-yjJfKwFTQDgjXuZ7g _model_server_result.datetime_utc '2025-01-28 03:08:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 6VYK # _exptl.entry_id 6VYK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 201 n n C1 O3P PCW sing 202 n n C1 H11 PCW sing 203 n n C1 H12 PCW sing 204 n n C2 C3 PCW sing 205 n n C2 O2 PCW sing 206 n n C2 H2 PCW sing 207 n n C3 O3 PCW sing 208 n n C3 H31 PCW sing 209 n n C3 H32 PCW sing 210 n n C4 C5 PCW sing 211 n n C4 O4P PCW sing 212 n n C4 H41 PCW sing 213 n n C4 H42 PCW sing 214 n n C5 N PCW sing 215 n n C5 H51 PCW sing 216 n n C5 H52 PCW sing 217 n n C6 N PCW sing 218 n n C6 H61 PCW sing 219 n n C6 H62 PCW sing 220 n n C6 H63 PCW sing 221 n n C7 N PCW sing 222 n n C7 H71 PCW sing 223 n n C7 H72 PCW sing 224 n n C7 H73 PCW sing 225 n n C8 N PCW sing 226 n n C8 H81 PCW sing 227 n n C8 H82 PCW sing 228 n n C8 H83 PCW sing 229 n n C11 C12 PCW sing 230 n n C11 O3 PCW sing 231 n n C11 O11 PCW doub 232 n n C12 C13 PCW sing 233 n n C12 H121 PCW sing 234 n n C12 H122 PCW sing 235 n n C13 C14 PCW sing 236 n n C13 H131 PCW sing 237 n n C13 H132 PCW sing 238 n n C14 C15 PCW sing 239 n n C14 H141 PCW sing 240 n n C14 H142 PCW sing 241 n n C15 C16 PCW sing 242 n n C15 H151 PCW sing 243 n n C15 H152 PCW sing 244 n n C16 C17 PCW sing 245 n n C16 H161 PCW sing 246 n n C16 H162 PCW sing 247 n n C17 C18 PCW sing 248 n n C17 H171 PCW sing 249 n n C17 H172 PCW sing 250 n n C18 C19 PCW sing 251 n n C18 H181 PCW sing 252 n n C18 H182 PCW sing 253 n n C19 C20 PCW doub 254 z n C19 H19 PCW sing 255 n n C20 C21 PCW sing 256 n n C20 H20 PCW sing 257 n n C21 C22 PCW sing 258 n n C21 H211 PCW sing 259 n n C21 H212 PCW sing 260 n n C22 C23 PCW sing 261 n n C22 H221 PCW sing 262 n n C22 H222 PCW sing 263 n n C23 C24 PCW sing 264 n n C23 H231 PCW sing 265 n n C23 H232 PCW sing 266 n n C24 C25 PCW sing 267 n n C24 H241 PCW sing 268 n n C24 H242 PCW sing 269 n n C25 C26 PCW sing 270 n n C25 H251 PCW sing 271 n n C25 H252 PCW sing 272 n n C26 C27 PCW sing 273 n n C26 H261 PCW sing 274 n n C26 H262 PCW sing 275 n n C27 C28 PCW sing 276 n n C27 H271 PCW sing 277 n n C27 H272 PCW sing 278 n n C28 H281 PCW sing 279 n n C28 H282 PCW sing 280 n n C28 H283 PCW sing 281 n n C31 C32 PCW sing 282 n n C31 O2 PCW sing 283 n n C31 O31 PCW doub 284 n n C32 C33 PCW sing 285 n n C32 H321 PCW sing 286 n n C32 H322 PCW sing 287 n n C33 C34 PCW sing 288 n n C33 H331 PCW sing 289 n n C33 H332 PCW sing 290 n n C34 C35 PCW sing 291 n n C34 H341 PCW sing 292 n n C34 H342 PCW sing 293 n n C35 C36 PCW sing 294 n n C35 H351 PCW sing 295 n n C35 H352 PCW sing 296 n n C36 C37 PCW sing 297 n n C36 H361 PCW sing 298 n n C36 H362 PCW sing 299 n n C37 C38 PCW sing 300 n n C37 H371 PCW sing 301 n n C37 H372 PCW sing 302 n n C38 C39 PCW sing 303 n n C38 H381 PCW sing 304 n n C38 H382 PCW sing 305 n n C39 C40 PCW doub 306 z n C39 H39 PCW sing 307 n n C40 C41 PCW sing 308 n n C40 H40 PCW sing 309 n n C41 C42 PCW sing 310 n n C41 H411 PCW sing 311 n n C41 H412 PCW sing 312 n n C42 C43 PCW sing 313 n n C42 H421 PCW sing 314 n n C42 H422 PCW sing 315 n n C43 C44 PCW sing 316 n n C43 H431 PCW sing 317 n n C43 H432 PCW sing 318 n n C44 C45 PCW sing 319 n n C44 H441 PCW sing 320 n n C44 H442 PCW sing 321 n n C45 C46 PCW sing 322 n n C45 H451 PCW sing 323 n n C45 H452 PCW sing 324 n n C46 C47 PCW sing 325 n n C46 H461 PCW sing 326 n n C46 H462 PCW sing 327 n n C47 C48 PCW sing 328 n n C47 H471 PCW sing 329 n n C47 H472 PCW sing 330 n n C48 H481 PCW sing 331 n n C48 H482 PCW sing 332 n n C48 H483 PCW sing 333 n n O1P P PCW sing 334 n n O1P H1P PCW sing 335 n n O2P P PCW doub 336 n n O3P P PCW sing 337 n n O4P P PCW sing 338 n n # _atom_sites.entry_id 6VYK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 PCW A 1 301 407 PCW PCW . I 2 PCW B 1 301 406 PCW PCW . J 2 PCW C 1 301 404 PCW PCW . K 2 PCW C 1 302 405 PCW PCW . L 2 PCW D 1 301 403 PCW PCW . M 2 PCW F 1 401 401 PCW PCW . N 2 PCW F 1 402 402 PCW PCW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . M 2 109.678 90.305 159.358 1 59.59 ? C1 PCW 401 F 1 HETATM 2 C C2 PCW . . . M 2 109.447 88.858 158.933 1 59.59 ? C2 PCW 401 F 1 HETATM 3 C C3 PCW . . . M 2 110.629 88.346 158.089 1 59.59 ? C3 PCW 401 F 1 HETATM 4 C C4 PCW . . . M 2 106.656 92.892 158.198 1 59.59 ? C4 PCW 401 F 1 HETATM 5 C C5 PCW . . . M 2 105.441 93.834 157.922 1 59.59 ? C5 PCW 401 F 1 HETATM 6 C C6 PCW . . . M 2 103.669 92.617 158.133 1 59.59 ? C6 PCW 401 F 1 HETATM 7 C C7 PCW . . . M 2 103.029 93.549 156.355 1 59.59 ? C7 PCW 401 F 1 HETATM 8 C C8 PCW . . . M 2 104.967 94.119 155.831 1 59.59 ? C8 PCW 401 F 1 HETATM 9 C C11 PCW . . . M 2 111.106 86.783 156.336 1 59.59 ? C11 PCW 401 F 1 HETATM 10 C C12 PCW . . . M 2 110.576 85.914 155.158 1 59.59 ? C12 PCW 401 F 1 HETATM 11 C C13 PCW . . . M 2 111.178 84.488 155.24 1 59.59 ? C13 PCW 401 F 1 HETATM 12 C C14 PCW . . . M 2 110.577 83.602 154.101 1 59.59 ? C14 PCW 401 F 1 HETATM 13 C C15 PCW . . . M 2 111.43 83.804 152.826 1 59.59 ? C15 PCW 401 F 1 HETATM 14 C C16 PCW . . . M 2 110.59 83.496 151.547 1 59.59 ? C16 PCW 401 F 1 HETATM 15 C C17 PCW . . . M 2 111.529 83.694 150.314 1 59.59 ? C17 PCW 401 F 1 HETATM 16 C C18 PCW . . . M 2 110.804 84.375 149.091 1 59.59 ? C18 PCW 401 F 1 HETATM 17 C C19 PCW . . . M 2 111.895 85.11 148.257 1 59.59 ? C19 PCW 401 F 1 HETATM 18 C C20 PCW . . . M 2 112.166 84.913 146.919 1 59.59 ? C20 PCW 401 F 1 HETATM 19 C C21 PCW . . . M 2 111.425 83.913 145.977 1 59.59 ? C21 PCW 401 F 1 HETATM 20 C C22 PCW . . . M 2 110.863 84.714 144.737 1 59.59 ? C22 PCW 401 F 1 HETATM 21 C C23 PCW . . . M 2 109.696 83.899 144.08 1 59.59 ? C23 PCW 401 F 1 HETATM 22 C C24 PCW . . . M 2 108.901 84.793 143.072 1 59.59 ? C24 PCW 401 F 1 HETATM 23 C C25 PCW . . . M 2 107.376 84.449 143.207 1 59.59 ? C25 PCW 401 F 1 HETATM 24 C C26 PCW . . . M 2 106.579 85.06 142.013 1 59.59 ? C26 PCW 401 F 1 HETATM 25 C C27 PCW . . . M 2 105.375 84.156 141.613 1 59.59 ? C27 PCW 401 F 1 HETATM 26 C C28 PCW . . . M 2 104.954 84.503 140.177 1 59.59 ? C28 PCW 401 F 1 HETATM 27 C C31 PCW . . . M 2 107.993 87.576 160.284 1 59.59 ? C31 PCW 401 F 1 HETATM 28 C C32 PCW . . . M 2 107.79 86.059 160.558 1 59.59 ? C32 PCW 401 F 1 HETATM 29 C C33 PCW . . . M 2 108.548 85.257 159.467 1 59.59 ? C33 PCW 401 F 1 HETATM 30 C C34 PCW . . . M 2 107.899 83.847 159.306 1 59.59 ? C34 PCW 401 F 1 HETATM 31 C C35 PCW . . . M 2 108.547 83.098 158.119 1 59.59 ? C35 PCW 401 F 1 HETATM 32 C C36 PCW . . . M 2 107.871 81.712 157.998 1 59.59 ? C36 PCW 401 F 1 HETATM 33 C C37 PCW . . . M 2 108.451 80.93 156.786 1 59.59 ? C37 PCW 401 F 1 HETATM 34 C C38 PCW . . . M 2 107.61 81.209 155.502 1 59.59 ? C38 PCW 401 F 1 HETATM 35 C C39 PCW . . . M 2 106.251 80.499 155.599 1 59.59 ? C39 PCW 401 F 1 HETATM 36 C C40 PCW . . . M 2 105.201 80.76 154.769 1 59.59 ? C40 PCW 401 F 1 HETATM 37 C C41 PCW . . . M 2 105.23 81.793 153.614 1 59.59 ? C41 PCW 401 F 1 HETATM 38 C C42 PCW . . . M 2 105.28 81.029 152.268 1 59.59 ? C42 PCW 401 F 1 HETATM 39 C C43 PCW . . . M 2 105.737 82 151.157 1 59.59 ? C43 PCW 401 F 1 HETATM 40 C C44 PCW . . . M 2 105.55 81.356 149.749 1 59.59 ? C44 PCW 401 F 1 HETATM 41 C C45 PCW . . . M 2 106.925 80.969 149.132 1 59.59 ? C45 PCW 401 F 1 HETATM 42 C C46 PCW . . . M 2 106.774 80.721 147.61 1 59.59 ? C46 PCW 401 F 1 HETATM 43 C C47 PCW . . . M 2 108.151 80.832 146.925 1 59.59 ? C47 PCW 401 F 1 HETATM 44 C C48 PCW . . . M 2 107.962 80.746 145.402 1 59.59 ? C48 PCW 401 F 1 HETATM 45 N N PCW . . . M 2 104.437 93.157 156.913 1 59.59 ? N PCW 401 F 1 HETATM 46 O O2 PCW . . . M 2 109.318 88.069 160.078 1 59.59 ? O2 PCW 401 F 1 HETATM 47 O O3 PCW . . . M 2 110.211 87.185 157.376 1 59.59 ? O3 PCW 401 F 1 HETATM 48 O O11 PCW . . . M 2 112.246 87.108 156.372 1 59.59 ? O11 PCW 401 F 1 HETATM 49 O O31 PCW . . . M 2 107.061 88.312 160.257 1 59.59 ? O31 PCW 401 F 1 HETATM 50 O O1P PCW . . . M 2 108.348 92.772 161.71 1 59.59 -1 O1P PCW 401 F 1 HETATM 51 O O2P PCW . . . M 2 109.393 93.164 159.511 1 59.59 ? O2P PCW 401 F 1 HETATM 52 O O3P PCW . . . M 2 108.53 90.758 160.064 1 59.59 ? O3P PCW 401 F 1 HETATM 53 O O4P PCW . . . M 2 106.819 92.827 159.613 1 59.59 ? O4P PCW 401 F 1 HETATM 54 P P PCW . . . M 2 108.307 92.413 160.247 1 59.59 ? P PCW 401 F 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 54 #