data_6VZ1
#
_model_server_result.job_id            ZfwozCDh2JYiIQznBYzMgQ 
_model_server_result.datetime_utc      '2024-11-05 03:38:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vz1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6VZ1 
#
_exptl.entry_id    6VZ1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              717.996 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VZ1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VZ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C39 H76 N O8 P' 
_chem_comp.formula_weight    717.996 
_chem_comp.id                6OU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 6OU sing 138 n n 
C48 C49 6OU sing 139 n n 
C47 C46 6OU sing 140 n n 
C41 C40 6OU doub 141 z n 
C41 C42 6OU sing 142 n n 
C40 C39 6OU sing 143 n n 
C27 C28 6OU sing 144 n n 
C27 O26 6OU sing 145 n n 
C28 N29 6OU sing 146 n n 
C01 C02 6OU sing 147 n n 
C42 C43 6OU sing 148 n n 
C02 C03 6OU sing 149 n n 
C45 C46 6OU sing 150 n n 
C45 C44 6OU sing 151 n n 
C39 C38 6OU sing 152 n n 
C33 C34 6OU sing 153 n n 
C33 C31 6OU sing 154 n n 
C44 C43 6OU sing 155 n n 
O26 P23 6OU sing 156 n n 
O24 P23 6OU doub 157 n n 
C35 C34 6OU sing 158 n n 
C35 C36 6OU sing 159 n n 
C38 C37 6OU sing 160 n n 
C36 C37 6OU sing 161 n n 
C31 O30 6OU sing 162 n n 
C31 O32 6OU doub 163 n n 
O22 P23 6OU sing 164 n n 
O22 C21 6OU sing 165 n n 
O30 C20 6OU sing 166 n n 
P23 O25 6OU sing 167 n n 
C03 C04 6OU sing 168 n n 
C04 C05 6OU sing 169 n n 
C19 C20 6OU sing 170 n n 
C19 O18 6OU sing 171 n n 
C21 C20 6OU sing 172 n n 
C15 C14 6OU sing 173 n n 
C15 C16 6OU sing 174 n n 
O18 C16 6OU sing 175 n n 
C14 C13 6OU sing 176 n n 
C05 C06 6OU sing 177 n n 
C16 O17 6OU doub 178 n n 
C06 C07 6OU sing 179 n n 
C11 C10 6OU sing 180 n n 
C11 C12 6OU sing 181 n n 
C13 C12 6OU sing 182 n n 
C10 C09 6OU sing 183 n n 
C07 C08 6OU sing 184 n n 
C09 C08 6OU sing 185 n n 
C01 H1 6OU sing 186 n n 
C01 H2 6OU sing 187 n n 
C01 H3 6OU sing 188 n n 
C02 H4 6OU sing 189 n n 
C02 H5 6OU sing 190 n n 
C03 H6 6OU sing 191 n n 
C03 H7 6OU sing 192 n n 
C04 H8 6OU sing 193 n n 
C04 H9 6OU sing 194 n n 
C05 H10 6OU sing 195 n n 
C05 H11 6OU sing 196 n n 
C06 H12 6OU sing 197 n n 
C06 H13 6OU sing 198 n n 
C07 H14 6OU sing 199 n n 
C07 H15 6OU sing 200 n n 
C08 H16 6OU sing 201 n n 
C08 H17 6OU sing 202 n n 
C09 H18 6OU sing 203 n n 
C09 H19 6OU sing 204 n n 
C10 H20 6OU sing 205 n n 
C10 H21 6OU sing 206 n n 
C11 H22 6OU sing 207 n n 
C11 H23 6OU sing 208 n n 
C12 H24 6OU sing 209 n n 
C12 H25 6OU sing 210 n n 
C13 H26 6OU sing 211 n n 
C13 H27 6OU sing 212 n n 
C14 H28 6OU sing 213 n n 
C14 H29 6OU sing 214 n n 
C15 H30 6OU sing 215 n n 
C15 H31 6OU sing 216 n n 
C19 H32 6OU sing 217 n n 
C19 H33 6OU sing 218 n n 
C20 H34 6OU sing 219 n n 
C21 H35 6OU sing 220 n n 
C21 H36 6OU sing 221 n n 
O25 H37 6OU sing 222 n n 
C27 H38 6OU sing 223 n n 
C27 H39 6OU sing 224 n n 
C28 H40 6OU sing 225 n n 
C28 H41 6OU sing 226 n n 
N29 H42 6OU sing 227 n n 
N29 H43 6OU sing 228 n n 
C33 H45 6OU sing 229 n n 
C33 H46 6OU sing 230 n n 
C34 H47 6OU sing 231 n n 
C34 H48 6OU sing 232 n n 
C35 H49 6OU sing 233 n n 
C35 H50 6OU sing 234 n n 
C36 H51 6OU sing 235 n n 
C36 H52 6OU sing 236 n n 
C37 H53 6OU sing 237 n n 
C37 H54 6OU sing 238 n n 
C38 H55 6OU sing 239 n n 
C38 H56 6OU sing 240 n n 
C39 H57 6OU sing 241 n n 
C39 H58 6OU sing 242 n n 
C40 H59 6OU sing 243 n n 
C41 H60 6OU sing 244 n n 
C42 H61 6OU sing 245 n n 
C42 H62 6OU sing 246 n n 
C43 H63 6OU sing 247 n n 
C43 H64 6OU sing 248 n n 
C44 H65 6OU sing 249 n n 
C44 H66 6OU sing 250 n n 
C45 H67 6OU sing 251 n n 
C45 H68 6OU sing 252 n n 
C46 H69 6OU sing 253 n n 
C46 H70 6OU sing 254 n n 
C47 H71 6OU sing 255 n n 
C47 H72 6OU sing 256 n n 
C48 H73 6OU sing 257 n n 
C48 H74 6OU sing 258 n n 
C49 H75 6OU sing 259 n n 
C49 H76 6OU sing 260 n n 
C49 H77 6OU sing 261 n n 
#
_atom_sites.entry_id                     6VZ1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6OU A 1 501 1 6OU PPE . 
D 2 6OU A 1 502 3 6OU PPE . 
E 3 3VV A 1 503 1 3VV 3VV . 
F 2 6OU B 1 501 2 6OU PPE . 
G 2 6OU B 1 502 4 6OU PPE . 
H 3 3VV B 1 503 2 3VV 3VV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 6OU . . . F 2 94.839 116.871 119.35 1 63.81 ? C01 6OU 501 B 1 
HETATM 2 C C02 6OU . . . F 2 95.098 118.253 118.791 1 63.81 ? C02 6OU 501 B 1 
HETATM 3 C C03 6OU . . . F 2 95.262 118.263 117.292 1 63.81 ? C03 6OU 501 B 1 
HETATM 4 C C04 6OU . . . F 2 95.513 119.632 116.691 1 63.81 ? C04 6OU 501 B 1 
HETATM 5 C C05 6OU . . . F 2 95.628 119.619 115.174 1 63.81 ? C05 6OU 501 B 1 
HETATM 6 C C06 6OU . . . F 2 95.752 120.995 114.548 1 63.81 ? C06 6OU 501 B 1 
HETATM 7 C C07 6OU . . . F 2 95.806 120.981 113.031 1 63.81 ? C07 6OU 501 B 1 
HETATM 8 C C08 6OU . . . F 2 94.745 120.103 112.39 1 63.81 ? C08 6OU 501 B 1 
HETATM 9 C C09 6OU . . . F 2 94.397 120.483 110.961 1 63.81 ? C09 6OU 501 B 1 
HETATM 10 C C10 6OU . . . F 2 95.572 120.515 109.997 1 63.81 ? C10 6OU 501 B 1 
HETATM 11 C C11 6OU . . . F 2 96.297 119.186 109.831 1 63.81 ? C11 6OU 501 B 1 
HETATM 12 C C12 6OU . . . F 2 97.024 119.048 108.5 1 63.81 ? C12 6OU 501 B 1 
HETATM 13 C C13 6OU . . . F 2 97.892 120.244 108.128 1 63.81 ? C13 6OU 501 B 1 
HETATM 14 C C14 6OU . . . F 2 98.395 120.221 106.692 1 63.81 ? C14 6OU 501 B 1 
HETATM 15 C C15 6OU . . . F 2 99.472 119.177 106.445 1 63.81 ? C15 6OU 501 B 1 
HETATM 16 C C16 6OU . . . F 2 99.67 118.883 104.991 1 63.81 ? C16 6OU 501 B 1 
HETATM 17 O O17 6OU . . . F 2 98.919 119.216 104.121 1 63.81 ? O17 6OU 501 B 1 
HETATM 18 O O18 6OU . . . F 2 100.777 118.178 104.781 1 63.81 ? O18 6OU 501 B 1 
HETATM 19 C C19 6OU . . . F 2 100.973 117.632 103.457 1 63.81 ? C19 6OU 501 B 1 
HETATM 20 C C20 6OU . . . F 2 101.609 118.651 102.556 1 63.81 ? C20 6OU 501 B 1 
HETATM 21 C C21 6OU . . . F 2 102.21 117.992 101.352 1 63.81 ? C21 6OU 501 B 1 
HETATM 22 O O22 6OU . . . F 2 103.62 117.827 101.596 1 63.81 ? O22 6OU 501 B 1 
HETATM 23 P P23 6OU . . . F 2 104.907 118.155 100.767 1 63.81 ? P23 6OU 501 B 1 
HETATM 24 O O24 6OU . . . F 2 106.06 118.267 101.772 1 63.81 ? O24 6OU 501 B 1 
HETATM 25 O O25 6OU . . . F 2 105.051 117.104 99.726 1 63.81 ? O25 6OU 501 B 1 
HETATM 26 O O26 6OU . . . F 2 104.674 119.637 100.201 1 63.81 ? O26 6OU 501 B 1 
HETATM 27 C C27 6OU . . . F 2 105.657 120.686 100.004 1 63.81 ? C27 6OU 501 B 1 
HETATM 28 C C28 6OU . . . F 2 104.985 122.021 99.544 1 63.81 ? C28 6OU 501 B 1 
HETATM 29 N N29 6OU . . . F 2 104.394 121.749 98.249 1 63.81 ? N29 6OU 501 B 1 
HETATM 30 O O30 6OU . . . F 2 102.732 119.256 103.263 1 63.81 ? O30 6OU 501 B 1 
HETATM 31 C C31 6OU . . . F 2 103.223 120.413 102.793 1 63.81 ? C31 6OU 501 B 1 
HETATM 32 O O32 6OU . . . F 2 102.751 121.015 101.868 1 63.81 ? O32 6OU 501 B 1 
HETATM 33 C C33 6OU . . . F 2 104.43 120.839 103.569 1 63.81 ? C33 6OU 501 B 1 
HETATM 34 C C34 6OU . . . F 2 104.14 122.012 104.485 1 63.81 ? C34 6OU 501 B 1 
HETATM 35 C C35 6OU . . . F 2 102.92 121.776 105.341 1 63.81 ? C35 6OU 501 B 1 
HETATM 36 C C36 6OU . . . F 2 102.702 122.837 106.391 1 63.81 ? C36 6OU 501 B 1 
HETATM 37 C C37 6OU . . . F 2 103.88 122.988 107.33 1 63.81 ? C37 6OU 501 B 1 
HETATM 38 C C38 6OU . . . F 2 104.364 121.682 107.948 1 63.81 ? C38 6OU 501 B 1 
HETATM 39 C C39 6OU . . . F 2 105.08 121.863 109.278 1 63.81 ? C39 6OU 501 B 1 
HETATM 40 C C40 6OU . . . F 2 104.139 122.305 110.353 1 63.81 ? C40 6OU 501 B 1 
HETATM 41 C C41 6OU . . . F 2 103.757 123.537 110.616 1 63.81 ? C41 6OU 501 B 1 
HETATM 42 C C42 6OU . . . F 2 102.806 123.934 111.692 1 63.81 ? C42 6OU 501 B 1 
HETATM 43 C C43 6OU . . . F 2 101.764 122.85 111.921 1 63.81 ? C43 6OU 501 B 1 
HETATM 44 C C44 6OU . . . F 2 100.998 122.99 113.216 1 63.81 ? C44 6OU 501 B 1 
HETATM 45 C C45 6OU . . . F 2 100.047 124.164 113.255 1 63.81 ? C45 6OU 501 B 1 
HETATM 46 C C46 6OU . . . F 2 98.937 124.091 112.225 1 63.81 ? C46 6OU 501 B 1 
HETATM 47 C C47 6OU . . . F 2 97.778 125.033 112.513 1 63.81 ? C47 6OU 501 B 1 
HETATM 48 C C48 6OU . . . F 2 97.051 124.724 113.81 1 63.81 ? C48 6OU 501 B 1 
HETATM 49 C C49 6OU . . . F 2 95.909 125.669 114.094 1 63.81 ? C49 6OU 501 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           49 
#