data_6VZ1 # _model_server_result.job_id FabnlwDRuzCB9-SaoHffvQ _model_server_result.datetime_utc '2024-11-05 03:42:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 6VZ1 # _exptl.entry_id 6VZ1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VZ1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 138 n n C48 C49 6OU sing 139 n n C47 C46 6OU sing 140 n n C41 C40 6OU doub 141 z n C41 C42 6OU sing 142 n n C40 C39 6OU sing 143 n n C27 C28 6OU sing 144 n n C27 O26 6OU sing 145 n n C28 N29 6OU sing 146 n n C01 C02 6OU sing 147 n n C42 C43 6OU sing 148 n n C02 C03 6OU sing 149 n n C45 C46 6OU sing 150 n n C45 C44 6OU sing 151 n n C39 C38 6OU sing 152 n n C33 C34 6OU sing 153 n n C33 C31 6OU sing 154 n n C44 C43 6OU sing 155 n n O26 P23 6OU sing 156 n n O24 P23 6OU doub 157 n n C35 C34 6OU sing 158 n n C35 C36 6OU sing 159 n n C38 C37 6OU sing 160 n n C36 C37 6OU sing 161 n n C31 O30 6OU sing 162 n n C31 O32 6OU doub 163 n n O22 P23 6OU sing 164 n n O22 C21 6OU sing 165 n n O30 C20 6OU sing 166 n n P23 O25 6OU sing 167 n n C03 C04 6OU sing 168 n n C04 C05 6OU sing 169 n n C19 C20 6OU sing 170 n n C19 O18 6OU sing 171 n n C21 C20 6OU sing 172 n n C15 C14 6OU sing 173 n n C15 C16 6OU sing 174 n n O18 C16 6OU sing 175 n n C14 C13 6OU sing 176 n n C05 C06 6OU sing 177 n n C16 O17 6OU doub 178 n n C06 C07 6OU sing 179 n n C11 C10 6OU sing 180 n n C11 C12 6OU sing 181 n n C13 C12 6OU sing 182 n n C10 C09 6OU sing 183 n n C07 C08 6OU sing 184 n n C09 C08 6OU sing 185 n n C01 H1 6OU sing 186 n n C01 H2 6OU sing 187 n n C01 H3 6OU sing 188 n n C02 H4 6OU sing 189 n n C02 H5 6OU sing 190 n n C03 H6 6OU sing 191 n n C03 H7 6OU sing 192 n n C04 H8 6OU sing 193 n n C04 H9 6OU sing 194 n n C05 H10 6OU sing 195 n n C05 H11 6OU sing 196 n n C06 H12 6OU sing 197 n n C06 H13 6OU sing 198 n n C07 H14 6OU sing 199 n n C07 H15 6OU sing 200 n n C08 H16 6OU sing 201 n n C08 H17 6OU sing 202 n n C09 H18 6OU sing 203 n n C09 H19 6OU sing 204 n n C10 H20 6OU sing 205 n n C10 H21 6OU sing 206 n n C11 H22 6OU sing 207 n n C11 H23 6OU sing 208 n n C12 H24 6OU sing 209 n n C12 H25 6OU sing 210 n n C13 H26 6OU sing 211 n n C13 H27 6OU sing 212 n n C14 H28 6OU sing 213 n n C14 H29 6OU sing 214 n n C15 H30 6OU sing 215 n n C15 H31 6OU sing 216 n n C19 H32 6OU sing 217 n n C19 H33 6OU sing 218 n n C20 H34 6OU sing 219 n n C21 H35 6OU sing 220 n n C21 H36 6OU sing 221 n n O25 H37 6OU sing 222 n n C27 H38 6OU sing 223 n n C27 H39 6OU sing 224 n n C28 H40 6OU sing 225 n n C28 H41 6OU sing 226 n n N29 H42 6OU sing 227 n n N29 H43 6OU sing 228 n n C33 H45 6OU sing 229 n n C33 H46 6OU sing 230 n n C34 H47 6OU sing 231 n n C34 H48 6OU sing 232 n n C35 H49 6OU sing 233 n n C35 H50 6OU sing 234 n n C36 H51 6OU sing 235 n n C36 H52 6OU sing 236 n n C37 H53 6OU sing 237 n n C37 H54 6OU sing 238 n n C38 H55 6OU sing 239 n n C38 H56 6OU sing 240 n n C39 H57 6OU sing 241 n n C39 H58 6OU sing 242 n n C40 H59 6OU sing 243 n n C41 H60 6OU sing 244 n n C42 H61 6OU sing 245 n n C42 H62 6OU sing 246 n n C43 H63 6OU sing 247 n n C43 H64 6OU sing 248 n n C44 H65 6OU sing 249 n n C44 H66 6OU sing 250 n n C45 H67 6OU sing 251 n n C45 H68 6OU sing 252 n n C46 H69 6OU sing 253 n n C46 H70 6OU sing 254 n n C47 H71 6OU sing 255 n n C47 H72 6OU sing 256 n n C48 H73 6OU sing 257 n n C48 H74 6OU sing 258 n n C49 H75 6OU sing 259 n n C49 H76 6OU sing 260 n n C49 H77 6OU sing 261 n n # _atom_sites.entry_id 6VZ1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6OU A 1 501 1 6OU PPE . D 2 6OU A 1 502 3 6OU PPE . E 3 3VV A 1 503 1 3VV 3VV . F 2 6OU B 1 501 2 6OU PPE . G 2 6OU B 1 502 4 6OU PPE . H 3 3VV B 1 503 2 3VV 3VV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6OU . . . G 2 109.535 102.466 116.407 1 59.22 ? C01 6OU 502 B 1 HETATM 2 C C02 6OU . . . G 2 108.167 101.964 116.014 1 59.22 ? C02 6OU 502 B 1 HETATM 3 C C03 6OU . . . G 2 107.463 102.877 115.038 1 59.22 ? C03 6OU 502 B 1 HETATM 4 C C04 6OU . . . G 2 108.143 102.98 113.69 1 59.22 ? C04 6OU 502 B 1 HETATM 5 C C05 6OU . . . G 2 107.715 104.184 112.878 1 59.22 ? C05 6OU 502 B 1 HETATM 6 C C06 6OU . . . G 2 106.278 104.159 112.395 1 59.22 ? C06 6OU 502 B 1 HETATM 7 C C07 6OU . . . G 2 106.033 103.267 111.2 1 59.22 ? C07 6OU 502 B 1 HETATM 8 C C08 6OU . . . G 2 104.776 103.64 110.441 1 59.22 ? C08 6OU 502 B 1 HETATM 9 C C09 6OU . . . G 2 104.389 102.66 109.353 1 59.22 ? C09 6OU 502 B 1 HETATM 10 C C10 6OU . . . G 2 103.128 103.025 108.585 1 59.22 ? C10 6OU 502 B 1 HETATM 11 C C11 6OU . . . G 2 103.267 104.215 107.654 1 59.22 ? C11 6OU 502 B 1 HETATM 12 C C12 6OU . . . G 2 101.956 104.635 107.015 1 59.22 ? C12 6OU 502 B 1 HETATM 13 C C13 6OU . . . G 2 101.391 103.661 106.008 1 59.22 ? C13 6OU 502 B 1 HETATM 14 C C14 6OU . . . G 2 99.974 103.992 105.594 1 59.22 ? C14 6OU 502 B 1 HETATM 15 C C15 6OU . . . G 2 99.477 103.146 104.435 1 59.22 ? C15 6OU 502 B 1 HETATM 16 C C16 6OU . . . G 2 99.827 101.696 104.563 1 59.22 ? C16 6OU 502 B 1 HETATM 17 O O17 6OU . . . G 2 100.455 101.079 103.754 1 59.22 ? O17 6OU 502 B 1 HETATM 18 O O18 6OU . . . G 2 99.365 101.169 105.695 1 59.22 ? O18 6OU 502 B 1 HETATM 19 C C19 6OU . . . G 2 99.67 99.775 105.934 1 59.22 ? C19 6OU 502 B 1 HETATM 20 C C20 6OU . . . G 2 101.032 99.645 106.566 1 59.22 ? C20 6OU 502 B 1 HETATM 21 C C21 6OU . . . G 2 101.708 98.378 106.131 1 59.22 ? C21 6OU 502 B 1 HETATM 22 O O22 6OU . . . G 2 103.081 98.665 105.81 1 59.22 ? O22 6OU 502 B 1 HETATM 23 P P23 6OU . . . G 2 104.422 97.877 106.003 1 59.22 ? P23 6OU 502 B 1 HETATM 24 O O24 6OU . . . G 2 105.391 98.849 106.635 1 59.22 ? O24 6OU 502 B 1 HETATM 25 O O25 6OU . . . G 2 104.231 96.655 106.797 1 59.22 ? O25 6OU 502 B 1 HETATM 26 O O26 6OU . . . G 2 104.948 97.569 104.536 1 59.22 ? O26 6OU 502 B 1 HETATM 27 C C27 6OU . . . G 2 104.909 96.303 103.834 1 59.22 ? C27 6OU 502 B 1 HETATM 28 C C28 6OU . . . G 2 106.21 96.083 103.008 1 59.22 ? C28 6OU 502 B 1 HETATM 29 N N29 6OU . . . G 2 106.109 94.747 102.413 1 59.22 ? N29 6OU 502 B 1 HETATM 30 O O30 6OU . . . G 2 100.888 99.602 108.023 1 59.22 ? O30 6OU 502 B 1 HETATM 31 C C31 6OU . . . G 2 101.999 99.719 108.767 1 59.22 ? C31 6OU 502 B 1 HETATM 32 O O32 6OU . . . G 2 103.102 99.82 108.311 1 59.22 ? O32 6OU 502 B 1 HETATM 33 C C33 6OU . . . G 2 101.685 99.729 110.229 1 59.22 ? C33 6OU 502 B 1 HETATM 34 C C34 6OU . . . G 2 101.096 101.051 110.689 1 59.22 ? C34 6OU 502 B 1 HETATM 35 C C35 6OU . . . G 2 101.227 101.268 112.177 1 59.22 ? C35 6OU 502 B 1 HETATM 36 C C36 6OU . . . G 2 102.615 101.67 112.597 1 59.22 ? C36 6OU 502 B 1 HETATM 37 C C37 6OU . . . G 2 102.791 101.81 114.091 1 59.22 ? C37 6OU 502 B 1 HETATM 38 C C38 6OU . . . G 2 102.655 100.504 114.831 1 59.22 ? C38 6OU 502 B 1 HETATM 39 C C39 6OU . . . G 2 103.714 100.301 115.902 1 59.22 ? C39 6OU 502 B 1 HETATM 40 C C40 6OU . . . G 2 103.608 101.239 117.051 1 59.22 ? C40 6OU 502 B 1 HETATM 41 C C41 6OU . . . G 2 103.889 100.943 118.3 1 59.22 ? C41 6OU 502 B 1 HETATM 42 C C42 6OU . . . G 2 104.362 99.616 118.798 1 59.22 ? C42 6OU 502 B 1 HETATM 43 C C43 6OU . . . G 2 104.758 99.628 120.271 1 59.22 ? C43 6OU 502 B 1 HETATM 44 C C44 6OU . . . G 2 103.651 100.061 121.222 1 59.22 ? C44 6OU 502 B 1 HETATM 45 C C45 6OU . . . G 2 104 99.917 122.696 1 59.22 ? C45 6OU 502 B 1 HETATM 46 C C46 6OU . . . G 2 104.535 101.179 123.365 1 59.22 ? C46 6OU 502 B 1 HETATM 47 C C47 6OU . . . G 2 105.861 101.697 122.819 1 59.22 ? C47 6OU 502 B 1 HETATM 48 C C48 6OU . . . G 2 106.427 102.876 123.583 1 59.22 ? C48 6OU 502 B 1 HETATM 49 C C49 6OU . . . G 2 107.636 103.484 122.928 1 59.22 ? C49 6OU 502 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 49 #