data_6VZH
#
_model_server_result.job_id            XpvYhf6_NqVSZwfMIGNYeA 
_model_server_result.datetime_utc      '2025-08-31 07:57:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vzh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":404}' 
#
_entry.id    6VZH 
#
_exptl.entry_id    6VZH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              359.33 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (7~{R})-2-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]amino]-5,7-dimethyl-8-prop-2-ynyl-7~{H}-pteridin-6-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VZH 
_cell.length_a            92.158 
_cell.length_b            95.641 
_cell.length_c            192.593 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VZH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,Q 1 1 
B,G,H,I,J,R 2 1 
C,K,L,S 3 1 
D,M,N,O,P,T 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 P N N 
#
_chem_comp.formula           'C17 H15 F2 N5 O2' 
_chem_comp.formula_weight    359.33 
_chem_comp.id                RYA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (7~{R})-2-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]amino]-5,7-dimethyl-8-prop-2-ynyl-7~{H}-pteridin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F2 C11 RYA sing 286 n n 
N4 C6 RYA doub 287 n y 
N4 C5 RYA sing 288 n y 
C10 C11 RYA doub 289 n y 
C10 C9 RYA sing 290 n y 
N5 C5 RYA sing 291 n n 
N5 C9 RYA sing 292 n n 
C6 C4 RYA sing 293 n y 
C11 C12 RYA sing 294 n y 
C5 N3 RYA doub 295 n y 
C9 C14 RYA doub 296 n y 
C7 N2 RYA sing 297 n n 
C4 N2 RYA sing 298 n n 
C4 C3 RYA doub 299 n y 
C12 O2 RYA sing 300 n n 
C12 C13 RYA doub 301 n y 
N3 C3 RYA sing 302 n y 
C14 C13 RYA sing 303 n y 
N2 C1 RYA sing 304 n n 
C3 N1 RYA sing 305 n n 
C13 F1 RYA sing 306 n n 
C1 O1 RYA doub 307 n n 
C1 C2 RYA sing 308 n n 
N1 C2 RYA sing 309 n n 
N1 C8 RYA sing 310 n n 
C2 C17 RYA sing 311 n n 
C8 C15 RYA sing 312 n n 
C15 C16 RYA trip 313 n n 
C14 H1 RYA sing 314 n n 
C6 H2 RYA sing 315 n n 
C7 H3 RYA sing 316 n n 
C7 H4 RYA sing 317 n n 
C7 H5 RYA sing 318 n n 
C8 H6 RYA sing 319 n n 
C8 H7 RYA sing 320 n n 
C10 H8 RYA sing 321 n n 
C2 H9 RYA sing 322 n n 
N5 H10 RYA sing 323 n n 
O2 H11 RYA sing 324 n n 
C16 H12 RYA sing 325 n n 
C17 H13 RYA sing 326 n n 
C17 H14 RYA sing 327 n n 
C17 H15 RYA sing 328 n n 
#
_atom_sites.entry_id                     6VZH 
_atom_sites.fract_transf_matrix[1][1]    0.010851 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010456 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005192 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 401 401 SO4 SO4 . 
F 2 SO4 A 1 402 402 SO4 SO4 . 
G 2 SO4 B 1 401 402 SO4 SO4 . 
H 2 SO4 B 1 402 403 SO4 SO4 . 
I 2 SO4 B 1 403 404 SO4 SO4 . 
J 3 RYA B 1 404 501 RYA DRG . 
K 2 SO4 C 1 401 401 SO4 SO4 . 
L 2 SO4 C 1 402 402 SO4 SO4 . 
M 2 SO4 D 1 401 402 SO4 SO4 . 
N 2 SO4 D 1 402 403 SO4 SO4 . 
O 4 EDO D 1 403 404 EDO EDO . 
P 3 RYA D 1 404 501 RYA DRG . 
Q 5 HOH A 1 501 12 HOH HOH . 
Q 5 HOH A 2 502 24 HOH HOH . 
Q 5 HOH A 3 503 23 HOH HOH . 
Q 5 HOH A 4 504 11 HOH HOH . 
Q 5 HOH A 5 505 18 HOH HOH . 
R 5 HOH B 1 501 16 HOH HOH . 
R 5 HOH B 2 502 21 HOH HOH . 
R 5 HOH B 3 503 14 HOH HOH . 
R 5 HOH B 4 504 22 HOH HOH . 
R 5 HOH B 5 505 26 HOH HOH . 
R 5 HOH B 6 506 17 HOH HOH . 
R 5 HOH B 7 507 9 HOH HOH . 
R 5 HOH B 8 508 2 HOH HOH . 
S 5 HOH C 1 501 25 HOH HOH . 
S 5 HOH C 2 502 29 HOH HOH . 
S 5 HOH C 3 503 15 HOH HOH . 
S 5 HOH C 4 504 27 HOH HOH . 
S 5 HOH C 5 505 28 HOH HOH . 
S 5 HOH C 6 506 32 HOH HOH . 
S 5 HOH C 7 507 6 HOH HOH . 
S 5 HOH C 8 508 33 HOH HOH . 
S 5 HOH C 9 509 30 HOH HOH . 
S 5 HOH C 10 510 10 HOH HOH . 
S 5 HOH C 11 511 5 HOH HOH . 
T 5 HOH D 1 501 3 HOH HOH . 
T 5 HOH D 2 502 19 HOH HOH . 
T 5 HOH D 3 503 4 HOH HOH . 
T 5 HOH D 4 504 13 HOH HOH . 
T 5 HOH D 5 505 31 HOH HOH . 
T 5 HOH D 6 506 1 HOH HOH . 
T 5 HOH D 7 507 8 HOH HOH . 
T 5 HOH D 8 508 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 RYA . . . P 3 -25.856 4.98 1.792 1 88.74 ? C4 RYA 404 D 1 
HETATM 2 C C14 RYA . . . P 3 -29.476 1.447 0.684 1 73.92 ? C14 RYA 404 D 1 
HETATM 3 C C5 RYA . . . P 3 -27.755 3.21 2.455 1 81.14 ? C5 RYA 404 D 1 
HETATM 4 C C6 RYA . . . P 3 -26.316 4.859 3.101 1 86.34 ? C6 RYA 404 D 1 
HETATM 5 C C11 RYA . . . P 3 -30.804 -0.558 2.036 1 70.87 ? C11 RYA 404 D 1 
HETATM 6 C C7 RYA . . . P 3 -24.224 6.753 2.426 1 94.3 ? C7 RYA 404 D 1 
HETATM 7 C C8 RYA . . . P 3 -26.847 3.659 -1.565 1 89.93 ? C8 RYA 404 D 1 
HETATM 8 C C9 RYA . . . P 3 -29.429 1.382 2.071 1 74.5 ? C9 RYA 404 D 1 
HETATM 9 C C10 RYA . . . P 3 -30.098 0.373 2.75 1 72.58 ? C10 RYA 404 D 1 
HETATM 10 C C12 RYA . . . P 3 -30.869 -0.519 0.656 1 71.43 ? C12 RYA 404 D 1 
HETATM 11 C C13 RYA . . . P 3 -30.194 0.497 0.004 1 71.51 ? C13 RYA 404 D 1 
HETATM 12 N N1 RYA . . . P 3 -26.031 4.218 -0.482 1 87.65 ? N1 RYA 404 D 1 
HETATM 13 N N2 RYA . . . P 3 -24.851 5.901 1.408 1 92.03 ? N2 RYA 404 D 1 
HETATM 14 C C3 RYA . . . P 3 -26.436 4.139 0.829 1 86.63 ? C3 RYA 404 D 1 
HETATM 15 N N3 RYA . . . P 3 -27.389 3.252 1.164 1 83.35 ? N3 RYA 404 D 1 
HETATM 16 C C1 RYA . . . P 3 -24.428 6.018 0.117 1 91.81 ? C1 RYA 404 D 1 
HETATM 17 C C2 RYA . . . P 3 -24.761 4.879 -0.824 1 88.19 ? C2 RYA 404 D 1 
HETATM 18 N N4 RYA . . . P 3 -27.25 3.977 3.433 1 83.32 ? N4 RYA 404 D 1 
HETATM 19 O O1 RYA . . . P 3 -23.803 6.998 -0.268 1 95.62 ? O1 RYA 404 D 1 
HETATM 20 N N5 RYA . . . P 3 -28.71 2.332 2.828 1 77.54 ? N5 RYA 404 D 1 
HETATM 21 O O2 RYA . . . P 3 -31.57 -1.445 -0.024 1 69.7 ? O2 RYA 404 D 1 
HETATM 22 F F1 RYA . . . P 3 -30.246 0.55 -1.343 1 71.48 ? F1 RYA 404 D 1 
HETATM 23 F F2 RYA . . . P 3 -31.455 -1.538 2.696 1 70.38 ? F2 RYA 404 D 1 
HETATM 24 C C15 RYA . . . P 3 -27.097 4.613 -2.65 1 95.91 ? C15 RYA 404 D 1 
HETATM 25 C C16 RYA . . . P 3 -27.305 5.356 -3.539 1 96.12 ? C16 RYA 404 D 1 
HETATM 26 C C17 RYA . . . P 3 -23.64 3.858 -0.852 1 85.87 ? C17 RYA 404 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           409 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#