data_6VZZ # _model_server_result.job_id VKR97HNF577WC6kATHNUUg _model_server_result.datetime_utc '2025-03-20 06:07:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vzz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 6VZZ # _exptl.entry_id 6VZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VZZ _cell.length_a 157.3 _cell.length_b 157.3 _cell.length_c 157.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall 'P 4bd 2ab 3' _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 19_444 -x-1/4,-z-1/4,-y-1/4 -1 0 0 0 0 -1 0 -1 0 -39.325 -39.325 -39.325 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 93 A GLU 82 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc2 A OE2 GLU 93 A GLU 82 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc3 A O PRO 173 A PRO 162 1_555 C CA CA . A CA 402 21_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc4 A O PRO 183 A PRO 172 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc5 A OD1 ASP 184 A ASP 173 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc6 A OE1 GLU 246 A GLU 235 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc7 A OE2 GLU 246 A GLU 235 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc8 A OE1 GLU 246 A GLU 235 1_555 D CA CA . A CA 403 14_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc9 A OE2 GLU 246 A GLU 235 1_555 D CA CA . A CA 403 14_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc10 C CA CA . A CA 402 1_555 G O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc11 C CA CA . A CA 402 1_555 G O HOH . A HOH 535 23_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc12 E CA CA . A CA 404 1_555 G O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc13 E CA CA . A CA 404 1_555 G O HOH . A HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? metalc ? metalc14 E CA CA . A CA 404 1_555 G O HOH . A HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 107 n n C1 C2 EDO sing 108 n n C1 H11 EDO sing 109 n n C1 H12 EDO sing 110 n n O1 HO1 EDO sing 111 n n C2 O2 EDO sing 112 n n C2 H21 EDO sing 113 n n C2 H22 EDO sing 114 n n O2 HO2 EDO sing 115 n n # _atom_sites.entry_id 6VZZ _atom_sites.fract_transf_matrix[1][1] 0.006357 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGC A 1 401 401 BGC BGC . C 3 CA A 1 402 501 CA CA . D 3 CA A 1 403 502 CA CA . E 3 CA A 1 404 503 CA CA . F 4 EDO A 1 405 701 EDO EDO . G 5 HOH A 1 501 121 HOH HOH . G 5 HOH A 2 502 11 HOH HOH . G 5 HOH A 3 503 5 HOH HOH . G 5 HOH A 4 504 41 HOH HOH . G 5 HOH A 5 505 39 HOH HOH . G 5 HOH A 6 506 9 HOH HOH . G 5 HOH A 7 507 6 HOH HOH . G 5 HOH A 8 508 33 HOH HOH . G 5 HOH A 9 509 94 HOH HOH . G 5 HOH A 10 510 37 HOH HOH . G 5 HOH A 11 511 10 HOH HOH . G 5 HOH A 12 512 20 HOH HOH . G 5 HOH A 13 513 4 HOH HOH . G 5 HOH A 14 514 7 HOH HOH . G 5 HOH A 15 515 13 HOH HOH . G 5 HOH A 16 516 3 HOH HOH . G 5 HOH A 17 517 26 HOH HOH . G 5 HOH A 18 518 8 HOH HOH . G 5 HOH A 19 519 46 HOH HOH . G 5 HOH A 20 520 22 HOH HOH . G 5 HOH A 21 521 14 HOH HOH . G 5 HOH A 22 522 2 HOH HOH . G 5 HOH A 23 523 12 HOH HOH . G 5 HOH A 24 524 89 HOH HOH . G 5 HOH A 25 525 27 HOH HOH . G 5 HOH A 26 526 1 HOH HOH . G 5 HOH A 27 527 55 HOH HOH . G 5 HOH A 28 528 52 HOH HOH . G 5 HOH A 29 529 51 HOH HOH . G 5 HOH A 30 530 15 HOH HOH . G 5 HOH A 31 531 44 HOH HOH . G 5 HOH A 32 532 17 HOH HOH . G 5 HOH A 33 533 30 HOH HOH . G 5 HOH A 34 534 76 HOH HOH . G 5 HOH A 35 535 123 HOH HOH . G 5 HOH A 36 536 36 HOH HOH . G 5 HOH A 37 537 31 HOH HOH . G 5 HOH A 38 538 19 HOH HOH . G 5 HOH A 39 539 16 HOH HOH . G 5 HOH A 40 540 109 HOH HOH . G 5 HOH A 41 541 111 HOH HOH . G 5 HOH A 42 542 25 HOH HOH . G 5 HOH A 43 543 120 HOH HOH . G 5 HOH A 44 544 28 HOH HOH . G 5 HOH A 45 545 35 HOH HOH . G 5 HOH A 46 546 102 HOH HOH . G 5 HOH A 47 547 18 HOH HOH . G 5 HOH A 48 548 78 HOH HOH . G 5 HOH A 49 549 116 HOH HOH . G 5 HOH A 50 550 58 HOH HOH . G 5 HOH A 51 551 93 HOH HOH . G 5 HOH A 52 552 50 HOH HOH . G 5 HOH A 53 553 118 HOH HOH . G 5 HOH A 54 554 56 HOH HOH . G 5 HOH A 55 555 71 HOH HOH . G 5 HOH A 56 556 104 HOH HOH . G 5 HOH A 57 557 84 HOH HOH . G 5 HOH A 58 558 64 HOH HOH . G 5 HOH A 59 559 32 HOH HOH . G 5 HOH A 60 560 95 HOH HOH . G 5 HOH A 61 561 77 HOH HOH . G 5 HOH A 62 562 83 HOH HOH . G 5 HOH A 63 563 24 HOH HOH . G 5 HOH A 64 564 29 HOH HOH . G 5 HOH A 65 565 72 HOH HOH . G 5 HOH A 66 566 100 HOH HOH . G 5 HOH A 67 567 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -8.622 -56.379 -4.747 1 53.84 ? C1 EDO 405 A 1 HETATM 2 O O1 EDO . . . F 4 -9.127 -57.002 -3.554 1 59.32 ? O1 EDO 405 A 1 HETATM 3 C C2 EDO . . . F 4 -7.092 -56.324 -4.756 1 60.56 ? C2 EDO 405 A 1 HETATM 4 O O2 EDO . . . F 4 -6.621 -55.092 -5.344 1 56.1 ? O2 EDO 405 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #