data_6W0N # _model_server_result.job_id r2RPVlEY1das_k3mWUiUDQ _model_server_result.datetime_utc '2024-11-25 22:31:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w0n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6W0N # _exptl.entry_id 6W0N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(3~{S},4~{R})-3,4-bis(oxidanyl)pyrrolidin-1-yl]-2-[(3~{S})-3-methyl-3-oxidanyl-pyrrolidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W0N _cell.length_a 82.8 _cell.length_b 86.17 _cell.length_c 137.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W0N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C16 H19 F3 N4 O3' _chem_comp.formula_weight 372.342 _chem_comp.id RYS _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(3~{S},4~{R})-3,4-bis(oxidanyl)pyrrolidin-1-yl]-2-[(3~{S})-3-methyl-3-oxidanyl-pyrrolidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C2 RYS sing 297 n n C1 C2 RYS sing 298 n n C2 C5 RYS sing 299 n n C2 C3 RYS sing 300 n n C5 N1 RYS sing 301 n n C3 C4 RYS sing 302 n n N4 C16 RYS trip 303 n n N1 C4 RYS sing 304 n n N1 C6 RYS sing 305 n n C16 C7 RYS sing 306 n n F2 C15 RYS sing 307 n n C6 C7 RYS doub 308 n y C6 N2 RYS sing 309 n y C7 C8 RYS sing 310 n y N2 C10 RYS doub 311 n y C8 C15 RYS sing 312 n n C8 C9 RYS doub 313 n y C15 F1 RYS sing 314 n n C15 F3 RYS sing 315 n n C10 C9 RYS sing 316 n y C10 N3 RYS sing 317 n n O2 C12 RYS sing 318 n n N3 C11 RYS sing 319 n n N3 C14 RYS sing 320 n n C11 C12 RYS sing 321 n n C12 C13 RYS sing 322 n n C14 C13 RYS sing 323 n n C13 O1 RYS sing 324 n n C4 H1 RYS sing 325 n n C4 H2 RYS sing 326 n n C9 H3 RYS sing 327 n n C13 H4 RYS sing 328 n n C1 H5 RYS sing 329 n n C1 H6 RYS sing 330 n n C1 H7 RYS sing 331 n n C3 H8 RYS sing 332 n n C3 H9 RYS sing 333 n n C5 H10 RYS sing 334 n n C5 H11 RYS sing 335 n n C11 H12 RYS sing 336 n n C11 H13 RYS sing 337 n n C12 H14 RYS sing 338 n n C14 H15 RYS sing 339 n n C14 H16 RYS sing 340 n n O1 H17 RYS sing 341 n n O2 H18 RYS sing 342 n n O3 H19 RYS sing 343 n n # _atom_sites.entry_id 6W0N _atom_sites.fract_transf_matrix[1][1] 0.012077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RYS A 1 301 500 RYS PFE . D 3 SO4 A 1 302 2 SO4 SO4 . E 4 CIT A 1 303 1 CIT CIT . F 2 RYS B 1 301 500 RYS PFE . G 3 SO4 B 1 302 1 SO4 SO4 . H 3 SO4 B 1 303 3 SO4 SO4 . I 4 CIT B 1 304 2 CIT CIT . J 5 HOH A 1 401 129 HOH HOH . J 5 HOH A 2 402 64 HOH HOH . J 5 HOH A 3 403 37 HOH HOH . J 5 HOH A 4 404 79 HOH HOH . J 5 HOH A 5 405 51 HOH HOH . J 5 HOH A 6 406 156 HOH HOH . J 5 HOH A 7 407 105 HOH HOH . J 5 HOH A 8 408 101 HOH HOH . J 5 HOH A 9 409 147 HOH HOH . J 5 HOH A 10 410 99 HOH HOH . J 5 HOH A 11 411 38 HOH HOH . J 5 HOH A 12 412 73 HOH HOH . J 5 HOH A 13 413 84 HOH HOH . J 5 HOH A 14 414 29 HOH HOH . J 5 HOH A 15 415 78 HOH HOH . J 5 HOH A 16 416 75 HOH HOH . J 5 HOH A 17 417 23 HOH HOH . J 5 HOH A 18 418 11 HOH HOH . J 5 HOH A 19 419 152 HOH HOH . J 5 HOH A 20 420 162 HOH HOH . J 5 HOH A 21 421 120 HOH HOH . J 5 HOH A 22 422 45 HOH HOH . J 5 HOH A 23 423 40 HOH HOH . J 5 HOH A 24 424 74 HOH HOH . J 5 HOH A 25 425 106 HOH HOH . J 5 HOH A 26 426 15 HOH HOH . J 5 HOH A 27 427 133 HOH HOH . J 5 HOH A 28 428 151 HOH HOH . J 5 HOH A 29 429 154 HOH HOH . J 5 HOH A 30 430 9 HOH HOH . J 5 HOH A 31 431 65 HOH HOH . J 5 HOH A 32 432 159 HOH HOH . J 5 HOH A 33 433 21 HOH HOH . J 5 HOH A 34 434 145 HOH HOH . J 5 HOH A 35 435 103 HOH HOH . J 5 HOH A 36 436 48 HOH HOH . J 5 HOH A 37 437 4 HOH HOH . J 5 HOH A 38 438 122 HOH HOH . J 5 HOH A 39 439 49 HOH HOH . J 5 HOH A 40 440 104 HOH HOH . J 5 HOH A 41 441 32 HOH HOH . J 5 HOH A 42 442 121 HOH HOH . J 5 HOH A 43 443 146 HOH HOH . J 5 HOH A 44 444 76 HOH HOH . J 5 HOH A 45 445 153 HOH HOH . J 5 HOH A 46 446 150 HOH HOH . J 5 HOH A 47 447 80 HOH HOH . J 5 HOH A 48 448 134 HOH HOH . J 5 HOH A 49 449 57 HOH HOH . J 5 HOH A 50 450 24 HOH HOH . J 5 HOH A 51 451 30 HOH HOH . J 5 HOH A 52 452 119 HOH HOH . J 5 HOH A 53 453 60 HOH HOH . J 5 HOH A 54 454 130 HOH HOH . J 5 HOH A 55 455 123 HOH HOH . J 5 HOH A 56 456 163 HOH HOH . J 5 HOH A 57 457 44 HOH HOH . J 5 HOH A 58 458 158 HOH HOH . J 5 HOH A 59 459 102 HOH HOH . J 5 HOH A 60 460 100 HOH HOH . J 5 HOH A 61 461 127 HOH HOH . J 5 HOH A 62 462 16 HOH HOH . J 5 HOH A 63 463 125 HOH HOH . J 5 HOH A 64 464 13 HOH HOH . J 5 HOH A 65 465 77 HOH HOH . J 5 HOH A 66 466 31 HOH HOH . J 5 HOH A 67 467 1 HOH HOH . J 5 HOH A 68 468 161 HOH HOH . J 5 HOH A 69 469 2 HOH HOH . J 5 HOH A 70 470 132 HOH HOH . J 5 HOH A 71 471 149 HOH HOH . J 5 HOH A 72 472 148 HOH HOH . J 5 HOH A 73 473 160 HOH HOH . J 5 HOH A 74 474 155 HOH HOH . J 5 HOH A 75 475 27 HOH HOH . J 5 HOH A 76 476 131 HOH HOH . J 5 HOH A 77 477 81 HOH HOH . J 5 HOH A 78 478 180 HOH HOH . K 5 HOH B 1 401 136 HOH HOH . K 5 HOH B 2 402 35 HOH HOH . K 5 HOH B 3 403 143 HOH HOH . K 5 HOH B 4 404 142 HOH HOH . K 5 HOH B 5 405 14 HOH HOH . K 5 HOH B 6 406 85 HOH HOH . K 5 HOH B 7 407 7 HOH HOH . K 5 HOH B 8 408 47 HOH HOH . K 5 HOH B 9 409 22 HOH HOH . K 5 HOH B 10 410 140 HOH HOH . K 5 HOH B 11 411 86 HOH HOH . K 5 HOH B 12 412 56 HOH HOH . K 5 HOH B 13 413 42 HOH HOH . K 5 HOH B 14 414 93 HOH HOH . K 5 HOH B 15 415 126 HOH HOH . K 5 HOH B 16 416 118 HOH HOH . K 5 HOH B 17 417 17 HOH HOH . K 5 HOH B 18 418 36 HOH HOH . K 5 HOH B 19 419 167 HOH HOH . K 5 HOH B 20 420 92 HOH HOH . K 5 HOH B 21 421 115 HOH HOH . K 5 HOH B 22 422 54 HOH HOH . K 5 HOH B 23 423 53 HOH HOH . K 5 HOH B 24 424 112 HOH HOH . K 5 HOH B 25 425 117 HOH HOH . K 5 HOH B 26 426 26 HOH HOH . K 5 HOH B 27 427 98 HOH HOH . K 5 HOH B 28 428 137 HOH HOH . K 5 HOH B 29 429 88 HOH HOH . K 5 HOH B 30 430 157 HOH HOH . K 5 HOH B 31 431 18 HOH HOH . K 5 HOH B 32 432 113 HOH HOH . K 5 HOH B 33 433 166 HOH HOH . K 5 HOH B 34 434 171 HOH HOH . K 5 HOH B 35 435 109 HOH HOH . K 5 HOH B 36 436 10 HOH HOH . K 5 HOH B 37 437 20 HOH HOH . K 5 HOH B 38 438 50 HOH HOH . K 5 HOH B 39 439 33 HOH HOH . K 5 HOH B 40 440 172 HOH HOH . K 5 HOH B 41 441 87 HOH HOH . K 5 HOH B 42 442 41 HOH HOH . K 5 HOH B 43 443 96 HOH HOH . K 5 HOH B 44 444 111 HOH HOH . K 5 HOH B 45 445 39 HOH HOH . K 5 HOH B 46 446 91 HOH HOH . K 5 HOH B 47 447 95 HOH HOH . K 5 HOH B 48 448 63 HOH HOH . K 5 HOH B 49 449 110 HOH HOH . K 5 HOH B 50 450 12 HOH HOH . K 5 HOH B 51 451 6 HOH HOH . K 5 HOH B 52 452 94 HOH HOH . K 5 HOH B 53 453 25 HOH HOH . K 5 HOH B 54 454 164 HOH HOH . K 5 HOH B 55 455 174 HOH HOH . K 5 HOH B 56 456 62 HOH HOH . K 5 HOH B 57 457 55 HOH HOH . K 5 HOH B 58 458 116 HOH HOH . K 5 HOH B 59 459 69 HOH HOH . K 5 HOH B 60 460 82 HOH HOH . K 5 HOH B 61 461 176 HOH HOH . K 5 HOH B 62 462 8 HOH HOH . K 5 HOH B 63 463 124 HOH HOH . K 5 HOH B 64 464 114 HOH HOH . K 5 HOH B 65 465 108 HOH HOH . K 5 HOH B 66 466 58 HOH HOH . K 5 HOH B 67 467 71 HOH HOH . K 5 HOH B 68 468 141 HOH HOH . K 5 HOH B 69 469 5 HOH HOH . K 5 HOH B 70 470 175 HOH HOH . K 5 HOH B 71 471 68 HOH HOH . K 5 HOH B 72 472 83 HOH HOH . K 5 HOH B 73 473 52 HOH HOH . K 5 HOH B 74 474 46 HOH HOH . K 5 HOH B 75 475 168 HOH HOH . K 5 HOH B 76 476 19 HOH HOH . K 5 HOH B 77 477 66 HOH HOH . K 5 HOH B 78 478 43 HOH HOH . K 5 HOH B 79 479 67 HOH HOH . K 5 HOH B 80 480 173 HOH HOH . K 5 HOH B 81 481 34 HOH HOH . K 5 HOH B 82 482 165 HOH HOH . K 5 HOH B 83 483 61 HOH HOH . K 5 HOH B 84 484 72 HOH HOH . K 5 HOH B 85 485 135 HOH HOH . K 5 HOH B 86 486 128 HOH HOH . K 5 HOH B 87 487 178 HOH HOH . K 5 HOH B 88 488 169 HOH HOH . K 5 HOH B 89 489 97 HOH HOH . K 5 HOH B 90 490 177 HOH HOH . K 5 HOH B 91 491 107 HOH HOH . K 5 HOH B 92 492 70 HOH HOH . K 5 HOH B 93 493 138 HOH HOH . K 5 HOH B 94 494 144 HOH HOH . K 5 HOH B 95 495 139 HOH HOH . K 5 HOH B 96 496 170 HOH HOH . K 5 HOH B 97 497 90 HOH HOH . K 5 HOH B 98 498 89 HOH HOH . K 5 HOH B 99 499 179 HOH HOH . K 5 HOH B 100 500 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 RYS . . . F 2 -27.035 20.715 51.559 1 79.24 ? N3 RYS 301 B 1 HETATM 2 C C4 RYS . . . F 2 -23.511 21.166 54.682 1 56.65 ? C4 RYS 301 B 1 HETATM 3 N N2 RYS . . . F 2 -25.682 21.632 53.204 1 61.91 ? N2 RYS 301 B 1 HETATM 4 C C7 RYS . . . F 2 -26.182 23.793 54.276 1 58.85 ? C7 RYS 301 B 1 HETATM 5 C C6 RYS . . . F 2 -25.412 22.588 54.108 1 56.65 ? C6 RYS 301 B 1 HETATM 6 C C9 RYS . . . F 2 -27.577 22.901 52.469 1 66.36 ? C9 RYS 301 B 1 HETATM 7 C C13 RYS . . . F 2 -26.46 18.674 50.569 1 88.02 ? C13 RYS 301 B 1 HETATM 8 C C8 RYS . . . F 2 -27.281 23.889 53.405 1 66.89 ? C8 RYS 301 B 1 HETATM 9 C C16 RYS . . . F 2 -25.891 24.879 55.169 1 58.11 ? C16 RYS 301 B 1 HETATM 10 C C1 RYS . . . F 2 -22.14 22.664 57.865 1 48.8 ? C1 RYS 301 B 1 HETATM 11 C C2 RYS . . . F 2 -23.154 22.036 56.921 1 54.88 ? C2 RYS 301 B 1 HETATM 12 C C3 RYS . . . F 2 -22.511 21.161 55.838 1 58.74 ? C3 RYS 301 B 1 HETATM 13 N N1 RYS . . . F 2 -24.328 22.36 54.92 1 54.52 ? N1 RYS 301 B 1 HETATM 14 C C5 RYS . . . F 2 -23.897 23.086 56.114 1 51.24 ? C5 RYS 301 B 1 HETATM 15 C C10 RYS . . . F 2 -26.755 21.77 52.404 1 68.38 ? C10 RYS 301 B 1 HETATM 16 C C11 RYS . . . F 2 -27.594 20.844 50.215 1 85.03 ? C11 RYS 301 B 1 HETATM 17 C C12 RYS . . . F 2 -27.174 19.586 49.465 1 89.14 ? C12 RYS 301 B 1 HETATM 18 C C14 RYS . . . F 2 -26.837 19.311 51.898 1 84.41 ? C14 RYS 301 B 1 HETATM 19 O O1 RYS . . . F 2 -25.041 18.592 50.43 1 90.09 ? O1 RYS 301 B 1 HETATM 20 O O2 RYS . . . F 2 -26.305 19.904 48.374 1 93.25 ? O2 RYS 301 B 1 HETATM 21 C C15 RYS . . . F 2 -28.198 25.088 53.459 1 74.33 ? C15 RYS 301 B 1 HETATM 22 F F1 RYS . . . F 2 -29.222 24.995 52.622 1 77.37 ? F1 RYS 301 B 1 HETATM 23 F F2 RYS . . . F 2 -28.761 25.267 54.653 1 76.75 ? F2 RYS 301 B 1 HETATM 24 F F3 RYS . . . F 2 -27.569 26.214 53.194 1 75.54 ? F3 RYS 301 B 1 HETATM 25 N N4 RYS . . . F 2 -25.7 25.78 55.842 1 58.41 ? N4 RYS 301 B 1 HETATM 26 O O3 RYS . . . F 2 -24.084 21.26 57.697 1 60.17 ? O3 RYS 301 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #