data_6W0R # _model_server_result.job_id ZT5aGbSm-eslcU-5H6cc-w _model_server_result.datetime_utc '2024-12-04 08:52:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w0r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6W0R # _exptl.entry_id 6W0R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6W0R _cell.length_a 88.928 _cell.length_b 88.928 _cell.length_c 210.539 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W0R _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 199 A CYS 207 1_555 H S S5Y . B S5Y 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? covale ? covale2 B N2 DG 4 B DG 24 1_555 H C S5Y . B S5Y 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 A O CYS 233 A CYS 241 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc2 A O LEU 235 A LEU 243 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc3 A O VAL 238 A VAL 246 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc4 D NA NA . A NA 401 1_555 B OP2 DC 6 B DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 B DC 21 1_555 C N1 DG 4 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 B DC 21 1_555 C O6 DG 4 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 B DC 21 1_555 C N2 DG 4 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog4 B N1 DA 2 B DA 22 1_555 C N3 DT 3 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog5 B N2 DG 3 B DG 23 1_555 C O2 DC 2 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6W0R _atom_sites.fract_transf_matrix[1][1] 0.011245 _atom_sites.fract_transf_matrix[1][2] 0.006492 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA A 1 401 1 NA NA . E 5 NO3 A 1 402 1 NO3 NO3 . F 5 NO3 A 1 403 2 NO3 NO3 . G 5 NO3 A 1 404 3 NO3 NO3 . H 6 S5Y B 1 101 1 S5Y INX . I 7 HOH A 1 501 21 HOH HOH . I 7 HOH A 2 502 40 HOH HOH . I 7 HOH A 3 503 41 HOH HOH . I 7 HOH A 4 504 34 HOH HOH . I 7 HOH A 5 505 57 HOH HOH . I 7 HOH A 6 506 13 HOH HOH . I 7 HOH A 7 507 89 HOH HOH . I 7 HOH A 8 508 9 HOH HOH . I 7 HOH A 9 509 5 HOH HOH . I 7 HOH A 10 510 24 HOH HOH . I 7 HOH A 11 511 30 HOH HOH . I 7 HOH A 12 512 107 HOH HOH . I 7 HOH A 13 513 54 HOH HOH . I 7 HOH A 14 514 102 HOH HOH . I 7 HOH A 15 515 109 HOH HOH . I 7 HOH A 16 516 31 HOH HOH . I 7 HOH A 17 517 62 HOH HOH . I 7 HOH A 18 518 8 HOH HOH . I 7 HOH A 19 519 61 HOH HOH . I 7 HOH A 20 520 11 HOH HOH . I 7 HOH A 21 521 29 HOH HOH . I 7 HOH A 22 522 76 HOH HOH . I 7 HOH A 23 523 101 HOH HOH . I 7 HOH A 24 524 19 HOH HOH . I 7 HOH A 25 525 3 HOH HOH . I 7 HOH A 26 526 98 HOH HOH . I 7 HOH A 27 527 16 HOH HOH . I 7 HOH A 28 528 18 HOH HOH . I 7 HOH A 29 529 39 HOH HOH . I 7 HOH A 30 530 32 HOH HOH . I 7 HOH A 31 531 22 HOH HOH . I 7 HOH A 32 532 14 HOH HOH . I 7 HOH A 33 533 7 HOH HOH . I 7 HOH A 34 534 105 HOH HOH . I 7 HOH A 35 535 79 HOH HOH . I 7 HOH A 36 536 97 HOH HOH . I 7 HOH A 37 537 50 HOH HOH . I 7 HOH A 38 538 1 HOH HOH . I 7 HOH A 39 539 94 HOH HOH . I 7 HOH A 40 540 20 HOH HOH . I 7 HOH A 41 541 58 HOH HOH . I 7 HOH A 42 542 35 HOH HOH . I 7 HOH A 43 543 4 HOH HOH . I 7 HOH A 44 544 73 HOH HOH . I 7 HOH A 45 545 26 HOH HOH . I 7 HOH A 46 546 37 HOH HOH . I 7 HOH A 47 547 27 HOH HOH . I 7 HOH A 48 548 10 HOH HOH . I 7 HOH A 49 549 28 HOH HOH . I 7 HOH A 50 550 52 HOH HOH . I 7 HOH A 51 551 66 HOH HOH . I 7 HOH A 52 552 71 HOH HOH . I 7 HOH A 53 553 106 HOH HOH . I 7 HOH A 54 554 15 HOH HOH . I 7 HOH A 55 555 12 HOH HOH . I 7 HOH A 56 556 75 HOH HOH . I 7 HOH A 57 557 72 HOH HOH . I 7 HOH A 58 558 25 HOH HOH . I 7 HOH A 59 559 47 HOH HOH . I 7 HOH A 60 560 36 HOH HOH . I 7 HOH A 61 561 44 HOH HOH . I 7 HOH A 62 562 64 HOH HOH . I 7 HOH A 63 563 59 HOH HOH . I 7 HOH A 64 564 6 HOH HOH . I 7 HOH A 65 565 2 HOH HOH . I 7 HOH A 66 566 112 HOH HOH . I 7 HOH A 67 567 56 HOH HOH . I 7 HOH A 68 568 45 HOH HOH . I 7 HOH A 69 569 78 HOH HOH . I 7 HOH A 70 570 77 HOH HOH . I 7 HOH A 71 571 23 HOH HOH . I 7 HOH A 72 572 51 HOH HOH . I 7 HOH A 73 573 55 HOH HOH . I 7 HOH A 74 574 86 HOH HOH . I 7 HOH A 75 575 85 HOH HOH . I 7 HOH A 76 576 17 HOH HOH . I 7 HOH A 77 577 65 HOH HOH . I 7 HOH A 78 578 82 HOH HOH . I 7 HOH A 79 579 95 HOH HOH . I 7 HOH A 80 580 111 HOH HOH . I 7 HOH A 81 581 43 HOH HOH . I 7 HOH A 82 582 60 HOH HOH . I 7 HOH A 83 583 33 HOH HOH . I 7 HOH A 84 584 96 HOH HOH . I 7 HOH A 85 585 81 HOH HOH . I 7 HOH A 86 586 108 HOH HOH . I 7 HOH A 87 587 83 HOH HOH . I 7 HOH A 88 588 53 HOH HOH . I 7 HOH A 89 589 91 HOH HOH . I 7 HOH A 90 590 117 HOH HOH . I 7 HOH A 91 591 103 HOH HOH . I 7 HOH A 92 592 68 HOH HOH . I 7 HOH A 93 593 90 HOH HOH . I 7 HOH A 94 594 42 HOH HOH . I 7 HOH A 95 595 38 HOH HOH . I 7 HOH A 96 596 115 HOH HOH . I 7 HOH A 97 597 69 HOH HOH . I 7 HOH A 98 598 74 HOH HOH . I 7 HOH A 99 599 88 HOH HOH . I 7 HOH A 100 600 48 HOH HOH . I 7 HOH A 101 601 93 HOH HOH . I 7 HOH A 102 602 113 HOH HOH . I 7 HOH A 103 603 70 HOH HOH . I 7 HOH A 104 604 63 HOH HOH . I 7 HOH A 105 605 104 HOH HOH . I 7 HOH A 106 606 114 HOH HOH . I 7 HOH A 107 607 118 HOH HOH . I 7 HOH A 108 608 87 HOH HOH . I 7 HOH A 109 609 84 HOH HOH . I 7 HOH A 110 610 92 HOH HOH . I 7 HOH A 111 611 49 HOH HOH . J 7 HOH B 1 201 46 HOH HOH . J 7 HOH B 2 202 100 HOH HOH . J 7 HOH B 3 203 119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 19.892 _atom_site.Cartn_y -20.918 _atom_site.Cartn_z 6.031 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 1 #