data_6W0T # _model_server_result.job_id ALFZqY03sl7OyrIFmmLJtg _model_server_result.datetime_utc '2024-11-06 12:32:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 6W0T # _exptl.entry_id 6W0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.203 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-(2-methylpropyl)-2-oxidanylidene-5~{H}-pyrimidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6W0T _cell.length_a 87.774 _cell.length_b 87.774 _cell.length_c 83.105 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C9 H12 N2 O3' _chem_comp.formula_weight 196.203 _chem_comp.id S6Y _chem_comp.mon_nstd_flag . _chem_comp.name '6-(2-methylpropyl)-2-oxidanylidene-5~{H}-pyrimidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C9 S6Y doub 277 n n C9 N2 S6Y sing 278 n n C9 N1 S6Y sing 279 n n N2 C2 S6Y sing 280 n n N1 C4 S6Y doub 281 n n O1 C1 S6Y doub 282 n n C2 C1 S6Y sing 283 n n C2 C3 S6Y doub 284 n n C1 O2 S6Y sing 285 n n C4 C3 S6Y sing 286 n n C4 C5 S6Y sing 287 n n C5 C6 S6Y sing 288 n n C6 C7 S6Y sing 289 n n C6 C8 S6Y sing 290 n n C3 H1 S6Y sing 291 n n C5 H3 S6Y sing 292 n n C5 H4 S6Y sing 293 n n C7 H5 S6Y sing 294 n n C7 H6 S6Y sing 295 n n C7 H7 S6Y sing 296 n n C8 H8 S6Y sing 297 n n C8 H9 S6Y sing 298 n n C8 H10 S6Y sing 299 n n O2 H11 S6Y sing 300 n n C6 H12 S6Y sing 301 n n N2 H2 S6Y sing 302 n n # _atom_sites.entry_id 6W0T _atom_sites.fract_transf_matrix[1][1] 0.011393 _atom_sites.fract_transf_matrix[1][2] 0.006578 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 S6Y A 1 201 201 S6Y IPC . F 2 S6Y B 1 201 201 S6Y IPC . G 2 S6Y C 1 201 201 S6Y IPC . H 2 S6Y D 1 201 201 S6Y IPC . I 3 HOH A 1 301 70 HOH HOH . I 3 HOH A 2 302 119 HOH HOH . I 3 HOH A 3 303 86 HOH HOH . I 3 HOH A 4 304 21 HOH HOH . I 3 HOH A 5 305 118 HOH HOH . I 3 HOH A 6 306 23 HOH HOH . I 3 HOH A 7 307 131 HOH HOH . I 3 HOH A 8 308 24 HOH HOH . I 3 HOH A 9 309 99 HOH HOH . I 3 HOH A 10 310 69 HOH HOH . I 3 HOH A 11 311 114 HOH HOH . I 3 HOH A 12 312 75 HOH HOH . I 3 HOH A 13 313 81 HOH HOH . I 3 HOH A 14 314 115 HOH HOH . I 3 HOH A 15 315 4 HOH HOH . I 3 HOH A 16 316 112 HOH HOH . I 3 HOH A 17 317 27 HOH HOH . I 3 HOH A 18 318 9 HOH HOH . I 3 HOH A 19 319 19 HOH HOH . I 3 HOH A 20 320 13 HOH HOH . I 3 HOH A 21 321 92 HOH HOH . I 3 HOH A 22 322 61 HOH HOH . I 3 HOH A 23 323 60 HOH HOH . I 3 HOH A 24 324 49 HOH HOH . I 3 HOH A 25 325 11 HOH HOH . I 3 HOH A 26 326 116 HOH HOH . I 3 HOH A 27 327 109 HOH HOH . I 3 HOH A 28 328 33 HOH HOH . I 3 HOH A 29 329 29 HOH HOH . I 3 HOH A 30 330 35 HOH HOH . I 3 HOH A 31 331 57 HOH HOH . I 3 HOH A 32 332 113 HOH HOH . I 3 HOH A 33 333 34 HOH HOH . I 3 HOH A 34 334 111 HOH HOH . I 3 HOH A 35 335 59 HOH HOH . I 3 HOH A 36 336 5 HOH HOH . I 3 HOH A 37 337 36 HOH HOH . I 3 HOH A 38 338 67 HOH HOH . I 3 HOH A 39 339 14 HOH HOH . I 3 HOH A 40 340 10 HOH HOH . I 3 HOH A 41 341 77 HOH HOH . I 3 HOH A 42 342 17 HOH HOH . I 3 HOH A 43 343 130 HOH HOH . I 3 HOH A 44 344 54 HOH HOH . I 3 HOH A 45 345 1 HOH HOH . I 3 HOH A 46 346 68 HOH HOH . I 3 HOH A 47 347 22 HOH HOH . I 3 HOH A 48 348 32 HOH HOH . I 3 HOH A 49 349 89 HOH HOH . I 3 HOH A 50 350 87 HOH HOH . I 3 HOH A 51 351 110 HOH HOH . I 3 HOH A 52 352 12 HOH HOH . I 3 HOH A 53 353 26 HOH HOH . I 3 HOH A 54 354 42 HOH HOH . I 3 HOH A 55 355 100 HOH HOH . I 3 HOH A 56 356 20 HOH HOH . I 3 HOH A 57 357 28 HOH HOH . I 3 HOH A 58 358 117 HOH HOH . I 3 HOH A 59 359 73 HOH HOH . I 3 HOH A 60 360 127 HOH HOH . I 3 HOH A 61 361 108 HOH HOH . I 3 HOH A 62 362 3 HOH HOH . I 3 HOH A 63 363 78 HOH HOH . I 3 HOH A 64 364 31 HOH HOH . J 3 HOH B 1 301 96 HOH HOH . J 3 HOH B 2 302 15 HOH HOH . J 3 HOH B 3 303 52 HOH HOH . J 3 HOH B 4 304 104 HOH HOH . J 3 HOH B 5 305 53 HOH HOH . J 3 HOH B 6 306 62 HOH HOH . J 3 HOH B 7 307 102 HOH HOH . J 3 HOH B 8 308 125 HOH HOH . J 3 HOH B 9 309 37 HOH HOH . J 3 HOH B 10 310 47 HOH HOH . J 3 HOH B 11 311 124 HOH HOH . J 3 HOH B 12 312 80 HOH HOH . J 3 HOH B 13 313 133 HOH HOH . K 3 HOH C 1 301 85 HOH HOH . K 3 HOH C 2 302 25 HOH HOH . K 3 HOH C 3 303 122 HOH HOH . K 3 HOH C 4 304 105 HOH HOH . K 3 HOH C 5 305 101 HOH HOH . K 3 HOH C 6 306 74 HOH HOH . K 3 HOH C 7 307 38 HOH HOH . K 3 HOH C 8 308 95 HOH HOH . K 3 HOH C 9 309 48 HOH HOH . K 3 HOH C 10 310 128 HOH HOH . K 3 HOH C 11 311 88 HOH HOH . K 3 HOH C 12 312 121 HOH HOH . K 3 HOH C 13 313 84 HOH HOH . K 3 HOH C 14 314 2 HOH HOH . K 3 HOH C 15 315 126 HOH HOH . K 3 HOH C 16 316 93 HOH HOH . K 3 HOH C 17 317 56 HOH HOH . K 3 HOH C 18 318 66 HOH HOH . K 3 HOH C 19 319 98 HOH HOH . K 3 HOH C 20 320 91 HOH HOH . K 3 HOH C 21 321 76 HOH HOH . K 3 HOH C 22 322 94 HOH HOH . K 3 HOH C 23 323 71 HOH HOH . K 3 HOH C 24 324 18 HOH HOH . K 3 HOH C 25 325 55 HOH HOH . K 3 HOH C 26 326 123 HOH HOH . K 3 HOH C 27 327 46 HOH HOH . K 3 HOH C 28 328 90 HOH HOH . L 3 HOH D 1 301 72 HOH HOH . L 3 HOH D 2 302 30 HOH HOH . L 3 HOH D 3 303 16 HOH HOH . L 3 HOH D 4 304 82 HOH HOH . L 3 HOH D 5 305 65 HOH HOH . L 3 HOH D 6 306 58 HOH HOH . L 3 HOH D 7 307 129 HOH HOH . L 3 HOH D 8 308 43 HOH HOH . L 3 HOH D 9 309 83 HOH HOH . L 3 HOH D 10 310 51 HOH HOH . L 3 HOH D 11 311 106 HOH HOH . L 3 HOH D 12 312 44 HOH HOH . L 3 HOH D 13 313 7 HOH HOH . L 3 HOH D 14 314 50 HOH HOH . L 3 HOH D 15 315 39 HOH HOH . L 3 HOH D 16 316 45 HOH HOH . L 3 HOH D 17 317 120 HOH HOH . L 3 HOH D 18 318 107 HOH HOH . L 3 HOH D 19 319 97 HOH HOH . L 3 HOH D 20 320 132 HOH HOH . L 3 HOH D 21 321 64 HOH HOH . L 3 HOH D 22 322 63 HOH HOH . L 3 HOH D 23 323 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 S6Y . . . H 2 -13.71 37.795 6.255 1 54.11 ? N1 S6Y 201 D 1 HETATM 2 C C2 S6Y . . . H 2 -12.704 36.698 8.524 1 54.11 ? C2 S6Y 201 D 1 HETATM 3 C C3 S6Y . . . H 2 -12.689 35.957 7.341 1 53.36 ? C3 S6Y 201 D 1 HETATM 4 C C4 S6Y . . . H 2 -13.214 36.541 6.18 1 54.42 ? C4 S6Y 201 D 1 HETATM 5 C C5 S6Y . . . H 2 -13.275 35.872 4.815 1 54.81 ? C5 S6Y 201 D 1 HETATM 6 C C7 S6Y . . . H 2 -13.75 33.714 3.582 1 57.01 ? C7 S6Y 201 D 1 HETATM 7 C C8 S6Y . . . H 2 -11.539 34.073 4.69 1 57.37 ? C8 S6Y 201 D 1 HETATM 8 C C9 S6Y . . . H 2 -13.717 38.498 7.404 1 53.72 ? C9 S6Y 201 D 1 HETATM 9 O O3 S6Y . . . H 2 -14.192 39.659 7.418 1 52.92 ? O3 S6Y 201 D 1 HETATM 10 N N2 S6Y . . . H 2 -13.217 37.957 8.539 1 51.96 ? N2 S6Y 201 D 1 HETATM 11 C C1 S6Y . . . H 2 -12.154 36.114 9.79 1 54.17 ? C1 S6Y 201 D 1 HETATM 12 O O2 S6Y . . . H 2 -12.916 35.961 10.768 1 53.83 ? O2 S6Y 201 D 1 HETATM 13 O O1 S6Y . . . H 2 -10.943 35.808 9.847 1 55.4 ? O1 S6Y 201 D 1 HETATM 14 C C6 S6Y . . . H 2 -13.033 34.366 4.765 1 56.95 ? C6 S6Y 201 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 14 #