data_6W13 # _model_server_result.job_id HeS_0GwJtL5bg1znR07KAw _model_server_result.datetime_utc '2025-03-09 02:31:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":405}' # _entry.id 6W13 # _exptl.entry_id 6W13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6W13 _cell.length_a 90.707 _cell.length_b 90.707 _cell.length_c 210.803 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 199 A CYS 207 1_555 J S S5Y . B S5Y 101 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.047 ? covale ? covale2 A SG CYS 199 A CYS 207 1_555 J S S5Y . B S5Y 101 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.929 ? covale ? covale3 B O3' DA 2 B DA 22 1_555 B P 8OG 3 B 8OG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale4 B O3' 8OG 3 B 8OG 23 1_555 B P DG 4 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale5 B N2 DG 4 B DG 24 1_555 J C S5Y . B S5Y 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? metalc ? metalc1 A O GLN 35 A GLN 43 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc2 A OE1 GLN 127 A GLN 135 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc3 A OD2 ASP 167 A ASP 175 1_555 F MG MG . A MG 403 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc4 A O LEU 179 A LEU 187 1_555 G MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc5 A O GLY 181 A GLY 189 1_555 G MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc6 A OG SER 201 A SER 209 1_555 G MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc7 A O CYS 233 A CYS 241 1_555 E MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 A O LEU 235 A LEU 243 1_555 E MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc9 A O VAL 238 A VAL 246 1_555 E MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc10 A O TRP 299 A TRP 307 1_555 F MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc11 D MG MG . A MG 401 1_555 K O HOH . A HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc12 E MG MG . A MG 402 1_555 K O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc13 E MG MG . A MG 402 1_555 B OP2 DC 6 B DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 B DC 21 1_555 C N1 DG 5 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 B DC 21 1_555 C O6 DG 5 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 B DC 21 1_555 C N2 DG 5 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DA 2 B DA 22 1_555 C N3 DT 4 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 DA 2 B DA 22 1_555 C O4 DT 4 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 8OG 3 B 8OG 23 1_555 C N3 DC 3 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 8OG 3 B 8OG 23 1_555 C O2 DC 3 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 8OG 3 B 8OG 23 1_555 C N4 DC 3 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DG 4 B DG 24 1_555 C N3 DC 2 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N2 DG 4 B DG 24 1_555 C O2 DC 2 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O6 DG 4 B DG 24 1_555 C N4 DC 2 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DT 5 B DT 25 1_555 C N1 DA 1 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O4 DT 5 B DT 25 1_555 C N6 DA 1 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 41 n n C OXT ACT sing 42 n n C CH3 ACT sing 43 n n CH3 H1 ACT sing 44 n n CH3 H2 ACT sing 45 n n CH3 H3 ACT sing 46 n n # _atom_sites.entry_id 6W13 _atom_sites.fract_transf_matrix[1][1] 0.011025 _atom_sites.fract_transf_matrix[1][2] 0.006365 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 401 1 MG MG . E 4 MG A 1 402 2 MG MG . F 4 MG A 1 403 7 MG MG . G 4 MG A 1 404 9 MG MG . H 5 ACT A 1 405 1 ACT ACT . I 5 ACT A 1 406 2 ACT ACT . J 6 S5Y B 1 101 1 S5Y INX . K 7 HOH A 1 501 30 HOH HOH . K 7 HOH A 2 502 90 HOH HOH . K 7 HOH A 3 503 29 HOH HOH . K 7 HOH A 4 504 8 HOH HOH . K 7 HOH A 5 505 88 HOH HOH . K 7 HOH A 6 506 94 HOH HOH . K 7 HOH A 7 507 16 HOH HOH . K 7 HOH A 8 508 79 HOH HOH . K 7 HOH A 9 509 63 HOH HOH . K 7 HOH A 10 510 102 HOH HOH . K 7 HOH A 11 511 80 HOH HOH . K 7 HOH A 12 512 24 HOH HOH . K 7 HOH A 13 513 23 HOH HOH . K 7 HOH A 14 514 87 HOH HOH . K 7 HOH A 15 515 44 HOH HOH . K 7 HOH A 16 516 2 HOH HOH . K 7 HOH A 17 517 62 HOH HOH . K 7 HOH A 18 518 20 HOH HOH . K 7 HOH A 19 519 11 HOH HOH . K 7 HOH A 20 520 9 HOH HOH . K 7 HOH A 21 521 6 HOH HOH . K 7 HOH A 22 522 68 HOH HOH . K 7 HOH A 23 523 50 HOH HOH . K 7 HOH A 24 524 3 HOH HOH . K 7 HOH A 25 525 13 HOH HOH . K 7 HOH A 26 526 69 HOH HOH . K 7 HOH A 27 527 48 HOH HOH . K 7 HOH A 28 528 76 HOH HOH . K 7 HOH A 29 529 71 HOH HOH . K 7 HOH A 30 530 43 HOH HOH . K 7 HOH A 31 531 82 HOH HOH . K 7 HOH A 32 532 1 HOH HOH . K 7 HOH A 33 533 65 HOH HOH . K 7 HOH A 34 534 60 HOH HOH . K 7 HOH A 35 535 66 HOH HOH . K 7 HOH A 36 536 47 HOH HOH . K 7 HOH A 37 537 103 HOH HOH . K 7 HOH A 38 538 33 HOH HOH . K 7 HOH A 39 539 75 HOH HOH . K 7 HOH A 40 540 38 HOH HOH . K 7 HOH A 41 541 7 HOH HOH . K 7 HOH A 42 542 51 HOH HOH . K 7 HOH A 43 543 39 HOH HOH . K 7 HOH A 44 544 96 HOH HOH . K 7 HOH A 45 545 45 HOH HOH . K 7 HOH A 46 546 34 HOH HOH . K 7 HOH A 47 547 83 HOH HOH . K 7 HOH A 48 548 32 HOH HOH . K 7 HOH A 49 549 91 HOH HOH . K 7 HOH A 50 550 41 HOH HOH . K 7 HOH A 51 551 21 HOH HOH . K 7 HOH A 52 552 10 HOH HOH . K 7 HOH A 53 553 86 HOH HOH . K 7 HOH A 54 554 31 HOH HOH . K 7 HOH A 55 555 4 HOH HOH . K 7 HOH A 56 556 97 HOH HOH . K 7 HOH A 57 557 99 HOH HOH . K 7 HOH A 58 558 5 HOH HOH . K 7 HOH A 59 559 77 HOH HOH . K 7 HOH A 60 560 18 HOH HOH . K 7 HOH A 61 561 101 HOH HOH . K 7 HOH A 62 562 17 HOH HOH . K 7 HOH A 63 563 92 HOH HOH . K 7 HOH A 64 564 73 HOH HOH . K 7 HOH A 65 565 25 HOH HOH . K 7 HOH A 66 566 98 HOH HOH . K 7 HOH A 67 567 53 HOH HOH . K 7 HOH A 68 568 40 HOH HOH . K 7 HOH A 69 569 15 HOH HOH . K 7 HOH A 70 570 46 HOH HOH . K 7 HOH A 71 571 37 HOH HOH . K 7 HOH A 72 572 54 HOH HOH . K 7 HOH A 73 573 100 HOH HOH . K 7 HOH A 74 574 64 HOH HOH . K 7 HOH A 75 575 74 HOH HOH . K 7 HOH A 76 576 26 HOH HOH . K 7 HOH A 77 577 95 HOH HOH . K 7 HOH A 78 578 12 HOH HOH . K 7 HOH A 79 579 85 HOH HOH . K 7 HOH A 80 580 89 HOH HOH . K 7 HOH A 81 581 35 HOH HOH . K 7 HOH A 82 582 78 HOH HOH . K 7 HOH A 83 583 14 HOH HOH . L 7 HOH B 1 201 55 HOH HOH . L 7 HOH B 2 202 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . H 5 20.954 -25.327 -7.624 1 83.39 ? C ACT 405 A 1 HETATM 2 O O ACT . . . H 5 21.533 -26.169 -8.345 1 60.73 ? O ACT 405 A 1 HETATM 3 O OXT ACT . . . H 5 21.055 -24.085 -7.836 1 66.68 ? OXT ACT 405 A 1 HETATM 4 C CH3 ACT . . . H 5 20.115 -25.849 -6.483 1 63.67 ? CH3 ACT 405 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #