data_6W1M # _model_server_result.job_id FXblO3T5BHelAs4L943rxw _model_server_result.datetime_utc '2024-10-19 09:36:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":508}' # _entry.id 6W1M # _exptl.entry_id 6W1M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 293.363 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ondansetron _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W1M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C4 H4 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n F NAG 1 F 1 NAG A 502 NAG 2 n F NAG 2 F 2 NAG A 501 NAG 3 n G NAG 1 G 1 NAG A 503 NAG 3 n G NAG 2 G 2 NAG A 504 NAG 3 n G BMA 3 G 3 BMA A 505 BMA 4 n H NAG 1 H 1 NAG A 506 NAG 4 n H NAG 2 H 2 NAG A 507 NAG 2 n I NAG 1 I 1 NAG B 502 NAG 2 n I NAG 2 I 2 NAG B 501 NAG 3 n J NAG 1 J 1 NAG B 503 NAG 3 n J NAG 2 J 2 NAG B 504 NAG 3 n J BMA 3 J 3 BMA B 505 BMA 4 n K NAG 1 K 1 NAG B 506 NAG 4 n K NAG 2 K 2 NAG B 507 NAG 2 n L NAG 1 L 1 NAG C 502 NAG 2 n L NAG 2 L 2 NAG C 501 NAG 3 n M NAG 1 M 1 NAG C 503 NAG 3 n M NAG 2 M 2 NAG C 504 NAG 3 n M BMA 3 M 3 BMA C 505 BMA 4 n N NAG 1 N 1 NAG C 506 NAG 4 n N NAG 2 N 2 NAG C 507 NAG 2 n O NAG 1 O 1 NAG D 502 NAG 2 n O NAG 2 O 2 NAG D 501 NAG 3 n P NAG 1 P 1 NAG D 503 NAG 3 n P NAG 2 P 2 NAG D 504 NAG 3 n P BMA 3 P 3 BMA D 505 BMA 4 n Q NAG 1 Q 1 NAG D 506 NAG 4 n Q NAG 2 Q 2 NAG D 507 NAG 2 n R NAG 1 R 1 NAG E 502 NAG 2 n R NAG 2 R 2 NAG E 501 NAG 3 n S NAG 1 S 1 NAG E 503 NAG 3 n S NAG 2 S 2 NAG E 504 NAG 3 n S BMA 3 S 3 BMA E 505 BMA 4 n T NAG 1 T 1 NAG E 506 NAG 4 n T NAG 2 T 2 NAG E 507 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 142 A ASN 148 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 B ND2 ASN 142 B ASN 148 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 C ND2 ASN 142 C ASN 148 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 D ND2 ASN 142 D ASN 148 1_555 Q C1 NAG . Q NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale5 E ND2 ASN 142 E ASN 148 1_555 T C1 NAG . T NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C4 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing covale ? covale8 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 sing covale ? covale10 I O4 NAG . I NAG 1 1_555 I C4 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale11 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing covale ? covale12 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale13 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 sing covale ? covale14 L O4 NAG . L NAG 1 1_555 L C4 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale15 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing covale ? covale16 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale17 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 sing covale ? covale18 O O4 NAG . O NAG 1 1_555 O C4 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale19 P O4 NAG . P NAG 1 1_555 P C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 sing covale ? covale20 P O4 NAG . P NAG 2 1_555 P C1 BMA . P BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale21 Q O4 NAG . Q NAG 1 1_555 Q C1 NAG . Q NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 sing covale ? covale22 R O4 NAG . R NAG 1 1_555 R C4 NAG . R NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale23 S O4 NAG . S NAG 1 1_555 S C1 NAG . S NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing covale ? covale24 S O4 NAG . S NAG 2 1_555 S C1 BMA . S BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale25 T O4 NAG . T NAG 1 1_555 T C1 NAG . T NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 sing # _chem_comp.formula 'C18 H19 N3 O' _chem_comp.formula_weight 293.363 _chem_comp.id S87 _chem_comp.mon_nstd_flag . _chem_comp.name ondansetron _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 9-methyl-3-[(2-methylimidazol-1-yl)methyl]-2,3-dihydro-1~{H}-carbazol-4-one # _atom_sites.entry_id 6W1M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 5 S87 A 1 508 701 S87 OND . V 5 S87 B 1 508 701 S87 OND . W 5 S87 C 1 508 701 S87 OND . X 5 S87 D 1 508 701 S87 OND . Y 5 S87 E 1 508 701 S87 OND . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 S87 . . . V 5 124.999 96.225 94.343 1 74.38 ? C10 S87 508 B 1 HETATM 2 C C11 S87 . . . V 5 123.241 100.735 94.474 1 74.38 ? C11 S87 508 B 1 HETATM 3 C C12 S87 . . . V 5 122.557 98.062 94.789 1 74.38 ? C12 S87 508 B 1 HETATM 4 C C13 S87 . . . V 5 131.009 101.094 93.93 1 74.38 ? C13 S87 508 B 1 HETATM 5 C C14 S87 . . . V 5 130.742 101.073 91.823 1 74.38 ? C14 S87 508 B 1 HETATM 6 C C15 S87 . . . V 5 121.941 100.383 94.79 1 74.38 ? C15 S87 508 B 1 HETATM 7 C C16 S87 . . . V 5 121.601 99.046 94.946 1 74.38 ? C16 S87 508 B 1 HETATM 8 C C17 S87 . . . V 5 132.049 100.733 92.115 1 74.38 ? C17 S87 508 B 1 HETATM 9 C C18 S87 . . . V 5 130.696 101.231 95.402 1 74.38 ? C18 S87 508 B 1 HETATM 10 C C01 S87 . . . V 5 127.842 100.488 93.441 1 74.38 ? C01 S87 508 B 1 HETATM 11 C C02 S87 . . . V 5 128.272 99.167 93.422 1 74.38 ? C02 S87 508 B 1 HETATM 12 C C03 S87 . . . V 5 127.376 98.145 93.687 1 74.38 ? C03 S87 508 B 1 HETATM 13 C C04 S87 . . . V 5 126.031 98.449 93.975 1 74.38 ? C04 S87 508 B 1 HETATM 14 C C05 S87 . . . V 5 125.619 99.744 93.991 1 74.38 ? C05 S87 508 B 1 HETATM 15 C C06 S87 . . . V 5 126.527 100.773 93.723 1 74.38 ? C06 S87 508 B 1 HETATM 16 C C07 S87 . . . V 5 128.767 101.663 93.158 1 74.38 ? C07 S87 508 B 1 HETATM 17 C C08 S87 . . . V 5 124.211 99.735 94.314 1 74.38 ? C08 S87 508 B 1 HETATM 18 C C09 S87 . . . V 5 123.88 98.424 94.467 1 74.38 ? C09 S87 508 B 1 HETATM 19 N N01 S87 . . . V 5 124.972 97.665 94.264 1 74.38 ? N01 S87 508 B 1 HETATM 20 N N02 S87 . . . V 5 130.142 101.274 92.973 1 74.38 ? N02 S87 508 B 1 HETATM 21 N N03 S87 . . . V 5 132.169 100.758 93.425 1 74.38 ? N03 S87 508 B 1 HETATM 22 O O01 S87 . . . V 5 126.105 102.097 93.739 1 74.38 ? O01 S87 508 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #