data_6W1Y # _model_server_result.job_id G6Xx6ZsZZR8NK5DIiKPqkw _model_server_result.datetime_utc '2024-10-11 01:21:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":508}' # _entry.id 6W1Y # _exptl.entry_id 6W1Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 296.407 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{a}~{S})-2-[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]-3~{a},4,5,6-tetrahydro-3~{H}-benzo[de]isoquinolin-1-one _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W1Y _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C4 H4 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n F NAG 1 F 1 NAG A 502 NAG 2 n F NAG 2 F 2 NAG A 501 NAG 3 n G NAG 1 G 1 NAG A 503 NAG 3 n G NAG 2 G 2 NAG A 504 NAG 3 n G BMA 3 G 3 BMA A 505 BMA 4 n H NAG 1 H 1 NAG A 506 NAG 4 n H NAG 2 H 2 NAG A 507 NAG 2 n I NAG 1 I 1 NAG B 502 NAG 2 n I NAG 2 I 2 NAG B 501 NAG 3 n J NAG 1 J 1 NAG B 503 NAG 3 n J NAG 2 J 2 NAG B 504 NAG 3 n J BMA 3 J 3 BMA B 505 BMA 4 n K NAG 1 K 1 NAG B 506 NAG 4 n K NAG 2 K 2 NAG B 507 NAG 2 n L NAG 1 L 1 NAG C 502 NAG 2 n L NAG 2 L 2 NAG C 501 NAG 3 n M NAG 1 M 1 NAG C 503 NAG 3 n M NAG 2 M 2 NAG C 504 NAG 3 n M BMA 3 M 3 BMA C 505 BMA 4 n N NAG 1 N 1 NAG C 506 NAG 4 n N NAG 2 N 2 NAG C 507 NAG 2 n O NAG 1 O 1 NAG D 502 NAG 2 n O NAG 2 O 2 NAG D 501 NAG 3 n P NAG 1 P 1 NAG D 503 NAG 3 n P NAG 2 P 2 NAG D 504 NAG 3 n P BMA 3 P 3 BMA D 505 BMA 4 n Q NAG 1 Q 1 NAG D 506 NAG 4 n Q NAG 2 Q 2 NAG D 507 NAG 2 n R NAG 1 R 1 NAG E 502 NAG 2 n R NAG 2 R 2 NAG E 501 NAG 3 n S NAG 1 S 1 NAG E 503 NAG 3 n S NAG 2 S 2 NAG E 504 NAG 3 n S BMA 3 S 3 BMA E 505 BMA 4 n T NAG 1 T 1 NAG E 506 NAG 4 n T NAG 2 T 2 NAG E 507 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 135 1_555 A SG CYS 143 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 129 B CYS 135 1_555 B SG CYS 143 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 C SG CYS 129 C CYS 135 1_555 C SG CYS 143 C CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 129 D CYS 135 1_555 D SG CYS 143 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 E SG CYS 129 E CYS 135 1_555 E SG CYS 143 E CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 142 A ASN 148 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 B ND2 ASN 142 B ASN 148 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale3 C ND2 ASN 142 C ASN 148 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale4 D ND2 ASN 142 D ASN 148 1_555 Q C1 NAG . Q NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale5 E ND2 ASN 142 E ASN 148 1_555 T C1 NAG . T NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C4 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 sing covale ? covale8 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing covale ? covale10 I O4 NAG . I NAG 1 1_555 I C4 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale11 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing covale ? covale12 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing covale ? covale14 L O4 NAG . L NAG 1 1_555 L C4 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale15 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 sing covale ? covale16 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale17 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing covale ? covale18 O O4 NAG . O NAG 1 1_555 O C4 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale19 P O4 NAG . P NAG 1 1_555 P C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing covale ? covale20 P O4 NAG . P NAG 2 1_555 P C1 BMA . P BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale21 Q O4 NAG . Q NAG 1 1_555 Q C1 NAG . Q NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing covale ? covale22 R O4 NAG . R NAG 1 1_555 R C4 NAG . R NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale23 S O4 NAG . S NAG 1 1_555 S C1 NAG . S NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 sing covale ? covale24 S O4 NAG . S NAG 2 1_555 S C1 BMA . S BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale25 T O4 NAG . T NAG 1 1_555 T C1 NAG . T NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing # _chem_comp.formula 'C19 H24 N2 O' _chem_comp.formula_weight 296.407 _chem_comp.id O7B _chem_comp.mon_nstd_flag . _chem_comp.name (3~{a}~{S})-2-[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]-3~{a},4,5,6-tetrahydro-3~{H}-benzo[de]isoquinolin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Palonosetron;Aloxi # _atom_sites.entry_id 6W1Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 5 O7B A 1 508 601 O7B pal . V 5 O7B B 1 508 601 O7B pal . W 5 O7B C 1 508 601 O7B pal . X 5 O7B D 1 508 601 O7B pal . Y 5 O7B E 1 508 601 O7B pal . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 O7B . . . X 5 148.195 150.192 85.683 1 85.57 ? C01 O7B 508 D 1 HETATM 2 C C02 O7B . . . X 5 146.779 150.494 86.153 1 85.57 ? C02 O7B 508 D 1 HETATM 3 C C03 O7B . . . X 5 145.866 149.26 86.064 1 85.57 ? C03 O7B 508 D 1 HETATM 4 C C04 O7B . . . X 5 144.454 149.397 85.929 1 85.57 ? C04 O7B 508 D 1 HETATM 5 C C06 O7B . . . X 5 144.189 147.059 85.895 1 85.57 ? C06 O7B 508 D 1 HETATM 6 C C08 O7B . . . X 5 145.581 146.859 86.031 1 85.57 ? C08 O7B 508 D 1 HETATM 7 C C09 O7B . . . X 5 146.436 147.961 86.115 1 85.57 ? C09 O7B 508 D 1 HETATM 8 C C10 O7B . . . X 5 147.798 147.763 86.238 1 85.57 ? C10 O7B 508 D 1 HETATM 9 C C11 O7B . . . X 5 148.329 146.42 86.284 1 85.57 ? C11 O7B 508 D 1 HETATM 10 C C12 O7B . . . X 5 147.466 145.327 86.207 1 85.57 ? C12 O7B 508 D 1 HETATM 11 C C13 O7B . . . X 5 146.086 145.528 86.076 1 85.57 ? C13 O7B 508 D 1 HETATM 12 C C14 O7B . . . X 5 148.756 148.945 86.337 1 85.57 ? C14 O7B 508 D 1 HETATM 13 C C15 O7B . . . X 5 142.163 148.405 85.703 1 85.57 ? C15 O7B 508 D 1 HETATM 14 C C16 O7B . . . X 5 141.649 149.657 86.309 1 85.57 ? C16 O7B 508 D 1 HETATM 15 C C18 O7B . . . X 5 139.634 149.066 85.476 1 85.57 ? C18 O7B 508 D 1 HETATM 16 C C19 O7B . . . X 5 140.396 147.857 84.438 1 85.57 ? C19 O7B 508 D 1 HETATM 17 C C20 O7B . . . X 5 141.779 148.278 84.329 1 85.57 ? C20 O7B 508 D 1 HETATM 18 C C21 O7B . . . X 5 141.702 149.484 83.604 1 85.57 ? C21 O7B 508 D 1 HETATM 19 C C22 O7B . . . X 5 140.856 150.494 84.292 1 85.57 ? C22 O7B 508 D 1 HETATM 20 N N05 O7B . . . X 5 143.682 148.299 85.846 1 85.57 ? N05 O7B 508 D 1 HETATM 21 N N17 O7B . . . X 5 140.533 150.118 85.604 1 85.57 ? N17 O7B 508 D 1 HETATM 22 O O07 O7B . . . X 5 143.354 145.949 85.814 1 85.57 ? O07 O7B 508 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #