data_6W2B # _model_server_result.job_id ThFoCO8HvK7gmsqSeOFd5w _model_server_result.datetime_utc '2024-11-25 18:07:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 6W2B # _exptl.entry_id 6W2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.271 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Br-paroxetine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W2B _cell.length_a 128.02 _cell.length_b 161.91 _cell.length_c 139.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_657 -x+1,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 128.02 0 349.15 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 135 A ASN 208 1_555 D C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C19 H20 Br N O3' _chem_comp.formula_weight 390.271 _chem_comp.id RFS _chem_comp.mon_nstd_flag . _chem_comp.name Br-paroxetine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,4R)-3-{[(2H-1,3-benzodioxol-5-yl)oxy]methyl}-4-(4-bromophenyl)piperidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C23 RFS sing 305 n n O22 C19 RFS sing 306 n n C23 O24 RFS sing 307 n n C19 C20 RFS doub 308 n y C19 C18 RFS sing 309 n y C20 C21 RFS sing 310 n y O24 C18 RFS sing 311 n n C18 C17 RFS doub 312 n y C21 C16 RFS doub 313 n y C17 C16 RFS sing 314 n y C16 O15 RFS sing 315 n n O15 C14 RFS sing 316 n n C14 C05 RFS sing 317 n n C04 C05 RFS sing 318 n n C04 N03 RFS sing 319 n n C05 C06 RFS sing 320 n n N03 C02 RFS sing 321 n n C06 C07 RFS sing 322 n n C06 C01 RFS sing 323 n n C12 C07 RFS doub 324 n y C12 C11 RFS sing 325 n y C07 C08 RFS sing 326 n y C02 C01 RFS sing 327 n n C11 C10 RFS doub 328 n y C08 C09 RFS doub 329 n y C10 C09 RFS sing 330 n y C10 BR1 RFS sing 331 n n C17 H1 RFS sing 332 n n C20 H2 RFS sing 333 n n C21 H3 RFS sing 334 n n C01 H4 RFS sing 335 n n C01 H5 RFS sing 336 n n C02 H6 RFS sing 337 n n C02 H7 RFS sing 338 n n C04 H8 RFS sing 339 n n C04 H9 RFS sing 340 n n C05 H10 RFS sing 341 n n C06 H11 RFS sing 342 n n C08 H12 RFS sing 343 n n C09 H13 RFS sing 344 n n C11 H14 RFS sing 345 n n C12 H15 RFS sing 346 n n C14 H16 RFS sing 347 n n C14 H17 RFS sing 348 n n C23 H18 RFS sing 349 n n C23 H19 RFS sing 350 n n N03 H20 RFS sing 351 n n # _atom_sites.entry_id 6W2B _atom_sites.fract_transf_matrix[1][1] 0.007811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 701 701 NAG NAG . E 5 RFS A 1 703 705 RFS LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RFS . . . E 5 34.401 179.844 139.504 1 404.66 ? C10 RFS 703 A 1 HETATM 2 C C17 RFS . . . E 5 29.635 183.081 142.431 1 320.65 ? C17 RFS 703 A 1 HETATM 3 C C20 RFS . . . E 5 29.624 184.378 144.934 1 309.89 ? C20 RFS 703 A 1 HETATM 4 C C21 RFS . . . E 5 30.805 184.32 144.202 1 301.47 ? C21 RFS 703 A 1 HETATM 5 C C01 RFS . . . E 5 34.681 184.672 138.281 1 344.35 ? C01 RFS 703 A 1 HETATM 6 C C02 RFS . . . E 5 35.539 185.766 138.917 1 339.01 ? C02 RFS 703 A 1 HETATM 7 C C04 RFS . . . E 5 33.893 186.21 140.692 1 354.24 ? C04 RFS 703 A 1 HETATM 8 C C05 RFS . . . E 5 33.532 184.715 140.555 1 352.2 ? C05 RFS 703 A 1 HETATM 9 C C06 RFS . . . E 5 33.612 184.131 139.174 1 358.12 ? C06 RFS 703 A 1 HETATM 10 C C07 RFS . . . E 5 33.901 182.561 139.312 1 373.83 ? C07 RFS 703 A 1 HETATM 11 C C08 RFS . . . E 5 33.623 181.678 138.188 1 384.5 ? C08 RFS 703 A 1 HETATM 12 C C09 RFS . . . E 5 33.866 180.372 138.292 1 400.15 ? C09 RFS 703 A 1 HETATM 13 C C11 RFS . . . E 5 34.676 180.693 140.594 1 388.75 ? C11 RFS 703 A 1 HETATM 14 C C12 RFS . . . E 5 34.424 182.048 140.485 1 375.2 ? C12 RFS 703 A 1 HETATM 15 C C14 RFS . . . E 5 32.069 184.561 141.036 1 347.2 ? C14 RFS 703 A 1 HETATM 16 C C16 RFS . . . E 5 30.832 183.684 142.954 1 311.44 ? C16 RFS 703 A 1 HETATM 17 C C18 RFS . . . E 5 28.45 183.139 143.171 1 337.27 ? C18 RFS 703 A 1 HETATM 18 C C19 RFS . . . E 5 28.429 183.777 144.409 1 334.36 ? C19 RFS 703 A 1 HETATM 19 C C23 RFS . . . E 5 26.459 182.723 144.123 1 358.35 ? C23 RFS 703 A 1 HETATM 20 N N03 RFS . . . E 5 34.67 186.785 139.559 1 352.32 ? N03 RFS 703 A 1 HETATM 21 O O15 RFS . . . E 5 32.045 183.627 142.208 1 328.63 ? O15 RFS 703 A 1 HETATM 22 O O22 RFS . . . E 5 27.133 183.688 144.923 1 353.2 ? O22 RFS 703 A 1 HETATM 23 O O24 RFS . . . E 5 27.165 182.647 142.906 1 367.35 ? O24 RFS 703 A 1 HETATM 24 BR BR1 RFS . . . E 5 34.746 177.987 139.642 1 648.91 ? BR1 RFS 703 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #