data_6W2C # _model_server_result.job_id '_Ae1sYrU8eAgJxVXR6rT7A' _model_server_result.datetime_utc '2024-11-05 04:04:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":705}' # _entry.id 6W2C # _exptl.entry_id 6W2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 437.271 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description I-paroxetine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W2C _cell.length_a 126.99 _cell.length_b 159.95 _cell.length_c 140.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_657 -x+1,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 126.99 0 352.425 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C19 H20 I N O3' _chem_comp.formula_weight 437.271 _chem_comp.id RFY _chem_comp.mon_nstd_flag . _chem_comp.name I-paroxetine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,4R)-3-{[(2H-1,3-benzodioxol-5-yl)oxy]methyl}-4-(4-iodophenyl)piperidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C23 RFY sing 275 n n O22 C19 RFY sing 276 n n C23 O24 RFY sing 277 n n C19 C20 RFY doub 278 n y C19 C18 RFY sing 279 n y O24 C18 RFY sing 280 n n C20 C21 RFY sing 281 n y C18 C17 RFY doub 282 n y C21 C16 RFY doub 283 n y C17 C16 RFY sing 284 n y C16 O15 RFY sing 285 n n O15 C14 RFY sing 286 n n C14 C05 RFY sing 287 n n C04 C05 RFY sing 288 n n C04 N03 RFY sing 289 n n C05 C06 RFY sing 290 n n N03 C02 RFY sing 291 n n C06 C07 RFY sing 292 n n C06 C01 RFY sing 293 n n C08 C07 RFY doub 294 n y C08 C09 RFY sing 295 n y C07 C12 RFY sing 296 n y C09 C10 RFY doub 297 n y C12 C11 RFY doub 298 n y C10 C11 RFY sing 299 n y C10 I13 RFY sing 300 n n C02 C01 RFY sing 301 n n C17 H1 RFY sing 302 n n C20 H2 RFY sing 303 n n C21 H3 RFY sing 304 n n C01 H4 RFY sing 305 n n C01 H5 RFY sing 306 n n C02 H6 RFY sing 307 n n C02 H7 RFY sing 308 n n C04 H8 RFY sing 309 n n C04 H9 RFY sing 310 n n C05 H10 RFY sing 311 n n C06 H11 RFY sing 312 n n C08 H12 RFY sing 313 n n C09 H13 RFY sing 314 n n C11 H14 RFY sing 315 n n C12 H15 RFY sing 316 n n C14 H16 RFY sing 317 n n C14 H17 RFY sing 318 n n C23 H18 RFY sing 319 n n C23 H19 RFY sing 320 n n N03 H20 RFY sing 321 n n # _atom_sites.entry_id 6W2C _atom_sites.fract_transf_matrix[1][1] 0.007875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id RFY _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 705 _pdbx_nonpoly_scheme.auth_seq_num 705 _pdbx_nonpoly_scheme.pdb_mon_id RFY _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RFY . . . D 4 32.781 177.783 141.275 1 541.24 ? C10 RFY 705 A 1 HETATM 2 C C17 RFY . . . D 4 28.927 181.123 143.833 1 542.8 ? C17 RFY 705 A 1 HETATM 3 C C20 RFY . . . D 4 29.493 182.858 145.935 1 543.49 ? C20 RFY 705 A 1 HETATM 4 C C21 RFY . . . D 4 30.446 182.617 144.956 1 542.83 ? C21 RFY 705 A 1 HETATM 5 C C01 RFY . . . D 4 34.623 182.302 140.107 1 541.15 ? C01 RFY 705 A 1 HETATM 6 C C02 RFY . . . D 4 34.998 183.788 140.138 1 542.17 ? C02 RFY 705 A 1 HETATM 7 C C04 RFY . . . D 4 33.28 184.232 141.846 1 542.3 ? C04 RFY 705 A 1 HETATM 8 C C05 RFY . . . D 4 32.912 182.742 141.879 1 541.3 ? C05 RFY 705 A 1 HETATM 9 C C06 RFY . . . D 4 33.233 182.041 140.6 1 540.18 ? C06 RFY 705 A 1 HETATM 10 C C07 RFY . . . D 4 33.073 180.493 140.847 1 540.43 ? C07 RFY 705 A 1 HETATM 11 C C08 RFY . . . D 4 33.764 179.881 141.877 1 539.37 ? C08 RFY 705 A 1 HETATM 12 C C09 RFY . . . D 4 33.619 178.523 142.092 1 539.81 ? C09 RFY 705 A 1 HETATM 13 C C11 RFY . . . D 4 32.088 178.396 140.247 1 541.4 ? C11 RFY 705 A 1 HETATM 14 C C12 RFY . . . D 4 32.234 179.753 140.032 1 540.4 ? C12 RFY 705 A 1 HETATM 15 C C14 RFY . . . D 4 31.38 182.625 142.115 1 541.13 ? C14 RFY 705 A 1 HETATM 16 C C16 RFY . . . D 4 30.165 181.749 143.906 1 542.18 ? C16 RFY 705 A 1 HETATM 17 C C18 RFY . . . D 4 27.953 181.368 144.835 1 543.32 ? C18 RFY 705 A 1 HETATM 18 C C19 RFY . . . D 4 28.231 182.219 145.865 1 544.68 ? C19 RFY 705 A 1 HETATM 19 C C23 RFY . . . D 4 26.042 181.706 145.978 1 545.63 ? C23 RFY 705 A 1 HETATM 20 I I13 RFY . . . D 4 32.549 175.713 141.593 1 552.45 ? I13 RFY 705 A 1 HETATM 21 N N03 RFY . . . D 4 33.841 184.646 140.527 1 543.29 ? N03 RFY 705 A 1 HETATM 22 O O15 RFY . . . D 4 31.132 181.515 142.927 1 540.86 ? O15 RFY 705 A 1 HETATM 23 O O22 RFY . . . D 4 27.095 182.277 146.707 1 545 ? O22 RFY 705 A 1 HETATM 24 O O24 RFY . . . D 4 26.637 180.878 145.014 1 544.67 ? O24 RFY 705 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #