data_6W2G # _model_server_result.job_id 5tSWI3d2x9xfQltjwg_8WQ _model_server_result.datetime_utc '2024-10-10 16:27:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6W2G # _exptl.entry_id 6W2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.389 _cell.angle_gamma 90 _cell.entry_id 6W2G _cell.length_a 29.49 _cell.length_b 40.08 _cell.length_c 32.893 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 55 n n C1 C2 EDO sing 56 n n C1 H11 EDO sing 57 n n C1 H12 EDO sing 58 n n O1 HO1 EDO sing 59 n n C2 O2 EDO sing 60 n n C2 H21 EDO sing 61 n n C2 H22 EDO sing 62 n n O2 HO2 EDO sing 63 n n # _atom_sites.entry_id 6W2G _atom_sites.fract_transf_matrix[1][1] 0.03391 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000822 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 301 2 EDO EDO . D 2 EDO B 1 301 1 EDO EDO . E 2 EDO B 1 302 3 EDO EDO . F 3 HOH A 1 401 67 HOH HOH . F 3 HOH A 2 402 45 HOH HOH . F 3 HOH A 3 403 30 HOH HOH . F 3 HOH A 4 404 47 HOH HOH . F 3 HOH A 5 405 21 HOH HOH . F 3 HOH A 6 406 20 HOH HOH . F 3 HOH A 7 407 60 HOH HOH . F 3 HOH A 8 408 5 HOH HOH . F 3 HOH A 9 409 8 HOH HOH . F 3 HOH A 10 410 36 HOH HOH . F 3 HOH A 11 411 26 HOH HOH . F 3 HOH A 12 412 6 HOH HOH . F 3 HOH A 13 413 22 HOH HOH . F 3 HOH A 14 414 16 HOH HOH . F 3 HOH A 15 415 7 HOH HOH . F 3 HOH A 16 416 11 HOH HOH . F 3 HOH A 17 417 77 HOH HOH . F 3 HOH A 18 418 17 HOH HOH . F 3 HOH A 19 419 23 HOH HOH . F 3 HOH A 20 420 40 HOH HOH . F 3 HOH A 21 421 13 HOH HOH . F 3 HOH A 22 422 51 HOH HOH . F 3 HOH A 23 423 34 HOH HOH . F 3 HOH A 24 424 15 HOH HOH . F 3 HOH A 25 425 68 HOH HOH . F 3 HOH A 26 426 25 HOH HOH . F 3 HOH A 27 427 72 HOH HOH . F 3 HOH A 28 428 18 HOH HOH . F 3 HOH A 29 429 39 HOH HOH . F 3 HOH A 30 430 69 HOH HOH . F 3 HOH A 31 431 52 HOH HOH . F 3 HOH A 32 432 65 HOH HOH . F 3 HOH A 33 433 38 HOH HOH . F 3 HOH A 34 434 50 HOH HOH . F 3 HOH A 35 435 64 HOH HOH . F 3 HOH A 36 436 66 HOH HOH . G 3 HOH B 1 401 35 HOH HOH . G 3 HOH B 2 402 62 HOH HOH . G 3 HOH B 3 403 37 HOH HOH . G 3 HOH B 4 404 73 HOH HOH . G 3 HOH B 5 405 4 HOH HOH . G 3 HOH B 6 406 12 HOH HOH . G 3 HOH B 7 407 42 HOH HOH . G 3 HOH B 8 408 53 HOH HOH . G 3 HOH B 9 409 19 HOH HOH . G 3 HOH B 10 410 75 HOH HOH . G 3 HOH B 11 411 61 HOH HOH . G 3 HOH B 12 412 10 HOH HOH . G 3 HOH B 13 413 27 HOH HOH . G 3 HOH B 14 414 14 HOH HOH . G 3 HOH B 15 415 44 HOH HOH . G 3 HOH B 16 416 24 HOH HOH . G 3 HOH B 17 417 78 HOH HOH . G 3 HOH B 18 418 9 HOH HOH . G 3 HOH B 19 419 33 HOH HOH . G 3 HOH B 20 420 74 HOH HOH . G 3 HOH B 21 421 48 HOH HOH . G 3 HOH B 22 422 31 HOH HOH . G 3 HOH B 23 423 56 HOH HOH . G 3 HOH B 24 424 49 HOH HOH . G 3 HOH B 25 425 70 HOH HOH . G 3 HOH B 26 426 57 HOH HOH . G 3 HOH B 27 427 41 HOH HOH . G 3 HOH B 28 428 59 HOH HOH . G 3 HOH B 29 429 71 HOH HOH . G 3 HOH B 30 430 54 HOH HOH . G 3 HOH B 31 431 28 HOH HOH . G 3 HOH B 32 432 32 HOH HOH . G 3 HOH B 33 433 76 HOH HOH . G 3 HOH B 34 434 63 HOH HOH . G 3 HOH B 35 435 43 HOH HOH . G 3 HOH B 36 436 58 HOH HOH . G 3 HOH B 37 437 55 HOH HOH . G 3 HOH B 38 438 29 HOH HOH . G 3 HOH B 39 439 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -3.882 19.034 -12.164 1 19.86 ? C1 EDO 301 B 1 HETATM 2 O O1 EDO . . . D 2 -4.286 19.709 -13.363 1 22.95 ? O1 EDO 301 B 1 HETATM 3 C C2 EDO . . . D 2 -2.493 19.498 -11.75 1 12.83 ? C2 EDO 301 B 1 HETATM 4 O O2 EDO . . . D 2 -2.533 20.909 -11.494 1 16.61 ? O2 EDO 301 B 1 HETATM 5 H H11 EDO . . . D 2 -3.875 17.955 -12.332 1 23.83 ? H11 EDO 301 B 1 HETATM 6 H H12 EDO . . . D 2 -4.595 19.245 -11.364 1 23.83 ? H12 EDO 301 B 1 HETATM 7 H HO1 EDO . . . D 2 -5.251 19.695 -13.431 1 27.54 ? HO1 EDO 301 B 1 HETATM 8 H H21 EDO . . . D 2 -1.774 19.282 -12.543 1 15.4 ? H21 EDO 301 B 1 HETATM 9 H H22 EDO . . . D 2 -2.172 18.964 -10.852 1 15.4 ? H22 EDO 301 B 1 HETATM 10 H HO2 EDO . . . D 2 -1.768 21.161 -10.959 1 19.93 ? HO2 EDO 301 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #