data_6W2L # _model_server_result.job_id Ll09lDZW2hZA3rcZ0tO1zA _model_server_result.datetime_utc '2024-11-05 05:50:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 6W2L # _exptl.entry_id 6W2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.092 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6W2L _cell.length_a 185.67 _cell.length_b 185.67 _cell.length_c 113.351 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 34 A ASP 34 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc2 C MG MG . A MG 401 1_555 D O2A IPE . A IPE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc3 C MG MG . A MG 401 1_555 D O3B IPE . A IPE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc4 C MG MG . A MG 401 1_555 E O1A IPE . A IPE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 C MG MG . A MG 401 1_555 F O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C5 H12 O7 P2' _chem_comp.formula_weight 246.092 _chem_comp.id IPE _chem_comp.mon_nstd_flag . _chem_comp.name '3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ISOPENTENYL PYROPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 IPE sing 173 n n C1 C2 IPE sing 174 n n C1 H11 IPE sing 175 n n C1 H12 IPE sing 176 n n O1 PA IPE sing 177 n n C2 C3 IPE sing 178 n n C2 H21 IPE sing 179 n n C2 H22 IPE sing 180 n n C3 C4 IPE doub 181 n n C3 C5 IPE sing 182 n n C4 H41 IPE sing 183 n n C4 H42 IPE sing 184 n n C5 H51 IPE sing 185 n n C5 H52 IPE sing 186 n n C5 H53 IPE sing 187 n n PA O1A IPE doub 188 n n PA O2A IPE sing 189 n n PA O3A IPE sing 190 n n O2A H2A IPE sing 191 n n O3A PB IPE sing 192 n n PB O1B IPE sing 193 n n PB O2B IPE doub 194 n n PB O3B IPE sing 195 n n O1B H1B IPE sing 196 n n O3B H3B IPE sing 197 n n # _atom_sites.entry_id 6W2L _atom_sites.fract_transf_matrix[1][1] 0.005386 _atom_sites.fract_transf_matrix[1][2] 0.00311 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 401 1 MG MG . D 4 IPE A 1 402 2 IPE DRG . E 4 IPE A 1 403 3 IPE DRG . F 5 HOH A 1 501 83 HOH HOH . F 5 HOH A 2 502 5 HOH HOH . F 5 HOH A 3 503 154 HOH HOH . F 5 HOH A 4 504 106 HOH HOH . F 5 HOH A 5 505 27 HOH HOH . F 5 HOH A 6 506 401 HOH HOH . F 5 HOH A 7 507 121 HOH HOH . F 5 HOH A 8 508 132 HOH HOH . F 5 HOH A 9 509 50 HOH HOH . F 5 HOH A 10 510 74 HOH HOH . F 5 HOH A 11 511 88 HOH HOH . F 5 HOH A 12 512 128 HOH HOH . F 5 HOH A 13 513 77 HOH HOH . F 5 HOH A 14 514 75 HOH HOH . F 5 HOH A 15 515 103 HOH HOH . F 5 HOH A 16 516 109 HOH HOH . F 5 HOH A 17 517 107 HOH HOH . F 5 HOH A 18 518 38 HOH HOH . F 5 HOH A 19 519 117 HOH HOH . F 5 HOH A 20 520 123 HOH HOH . F 5 HOH A 21 521 125 HOH HOH . F 5 HOH A 22 522 134 HOH HOH . F 5 HOH A 23 523 126 HOH HOH . F 5 HOH A 24 524 153 HOH HOH . F 5 HOH A 25 525 110 HOH HOH . F 5 HOH A 26 526 54 HOH HOH . F 5 HOH A 27 527 7 HOH HOH . F 5 HOH A 28 528 122 HOH HOH . F 5 HOH A 29 529 155 HOH HOH . F 5 HOH A 30 530 13 HOH HOH . F 5 HOH A 31 531 53 HOH HOH . F 5 HOH A 32 532 102 HOH HOH . F 5 HOH A 33 533 91 HOH HOH . F 5 HOH A 34 534 118 HOH HOH . F 5 HOH A 35 535 104 HOH HOH . F 5 HOH A 36 536 78 HOH HOH . F 5 HOH A 37 537 3 HOH HOH . F 5 HOH A 38 538 80 HOH HOH . F 5 HOH A 39 539 45 HOH HOH . F 5 HOH A 40 540 43 HOH HOH . F 5 HOH A 41 541 116 HOH HOH . F 5 HOH A 42 542 87 HOH HOH . F 5 HOH A 43 543 115 HOH HOH . F 5 HOH A 44 544 12 HOH HOH . F 5 HOH A 45 545 11 HOH HOH . F 5 HOH A 46 546 90 HOH HOH . F 5 HOH A 47 547 46 HOH HOH . F 5 HOH A 48 548 119 HOH HOH . F 5 HOH A 49 549 108 HOH HOH . F 5 HOH A 50 550 120 HOH HOH . F 5 HOH A 51 551 41 HOH HOH . F 5 HOH A 52 552 47 HOH HOH . F 5 HOH A 53 553 22 HOH HOH . F 5 HOH A 54 554 79 HOH HOH . F 5 HOH A 55 555 137 HOH HOH . F 5 HOH A 56 556 92 HOH HOH . F 5 HOH A 57 557 114 HOH HOH . F 5 HOH A 58 558 42 HOH HOH . F 5 HOH A 59 559 111 HOH HOH . F 5 HOH A 60 560 133 HOH HOH . F 5 HOH A 61 561 24 HOH HOH . F 5 HOH A 62 562 105 HOH HOH . F 5 HOH A 63 563 113 HOH HOH . F 5 HOH A 64 564 85 HOH HOH . F 5 HOH A 65 565 93 HOH HOH . F 5 HOH A 66 566 112 HOH HOH . F 5 HOH A 67 567 49 HOH HOH . F 5 HOH A 68 568 76 HOH HOH . G 5 HOH B 1 301 96 HOH HOH . G 5 HOH B 2 302 2 HOH HOH . G 5 HOH B 3 303 58 HOH HOH . G 5 HOH B 4 304 101 HOH HOH . G 5 HOH B 5 305 68 HOH HOH . G 5 HOH B 6 306 34 HOH HOH . G 5 HOH B 7 307 19 HOH HOH . G 5 HOH B 8 308 156 HOH HOH . G 5 HOH B 9 309 142 HOH HOH . G 5 HOH B 10 310 70 HOH HOH . G 5 HOH B 11 311 56 HOH HOH . G 5 HOH B 12 312 17 HOH HOH . G 5 HOH B 13 313 131 HOH HOH . G 5 HOH B 14 314 151 HOH HOH . G 5 HOH B 15 315 157 HOH HOH . G 5 HOH B 16 316 94 HOH HOH . G 5 HOH B 17 317 144 HOH HOH . G 5 HOH B 18 318 158 HOH HOH . G 5 HOH B 19 319 141 HOH HOH . G 5 HOH B 20 320 61 HOH HOH . G 5 HOH B 21 321 65 HOH HOH . G 5 HOH B 22 322 146 HOH HOH . G 5 HOH B 23 323 6 HOH HOH . G 5 HOH B 24 324 10 HOH HOH . G 5 HOH B 25 325 73 HOH HOH . G 5 HOH B 26 326 150 HOH HOH . G 5 HOH B 27 327 140 HOH HOH . G 5 HOH B 28 328 9 HOH HOH . G 5 HOH B 29 329 152 HOH HOH . G 5 HOH B 30 330 143 HOH HOH . G 5 HOH B 31 331 32 HOH HOH . G 5 HOH B 32 332 33 HOH HOH . G 5 HOH B 33 333 148 HOH HOH . G 5 HOH B 34 334 145 HOH HOH . G 5 HOH B 35 335 62 HOH HOH . G 5 HOH B 36 336 57 HOH HOH . G 5 HOH B 37 337 149 HOH HOH . G 5 HOH B 38 338 138 HOH HOH . G 5 HOH B 39 339 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPE . . . E 4 -8.292 -31.824 -44.951 1 60.89 ? C1 IPE 403 A 1 HETATM 2 O O1 IPE . . . E 4 -9.154 -32.748 -45.53 1 60.21 ? O1 IPE 403 A 1 HETATM 3 C C2 IPE . . . E 4 -7.11 -32.734 -44.718 1 71.17 ? C2 IPE 403 A 1 HETATM 4 C C3 IPE . . . E 4 -5.763 -32.076 -44.679 1 77.5 ? C3 IPE 403 A 1 HETATM 5 C C4 IPE . . . E 4 -4.542 -32.972 -44.499 1 78.64 ? C4 IPE 403 A 1 HETATM 6 C C5 IPE . . . E 4 -5.641 -30.55 -44.792 1 76.13 ? C5 IPE 403 A 1 HETATM 7 P PA IPE . . . E 4 -9.974 -32.479 -46.814 1 63.27 ? PA IPE 403 A 1 HETATM 8 O O1A IPE . . . E 4 -9.611 -31.326 -47.704 1 66.64 ? O1A IPE 403 A 1 HETATM 9 O O2A IPE . . . E 4 -9.944 -33.817 -47.696 1 66.46 ? O2A IPE 403 A 1 HETATM 10 O O3A IPE . . . E 4 -11.415 -32.456 -46.039 1 61.94 ? O3A IPE 403 A 1 HETATM 11 P PB IPE . . . E 4 -12.801 -32.289 -46.765 1 67.94 ? PB IPE 403 A 1 HETATM 12 O O1B IPE . . . E 4 -13.826 -32.68 -45.55 1 63.7 ? O1B IPE 403 A 1 HETATM 13 O O2B IPE . . . E 4 -12.932 -33.4 -47.953 1 56.12 ? O2B IPE 403 A 1 HETATM 14 O O3B IPE . . . E 4 -13.022 -30.909 -47.319 1 63.07 ? O3B IPE 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 27 _model_server_stats.element_count 14 #