data_6W2X # _model_server_result.job_id fkj7G-0gjKFwbhiyn4SKKg _model_server_result.datetime_utc '2025-08-31 03:41:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":906}' # _entry.id 6W2X # _exptl.entry_id 6W2X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 402.252 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{S})-3-[[(1~{S})-1-(3,4-dichlorophenyl)ethyl]amino]-2-oxidanyl-propyl]-(phenylmethyl)phosphinic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W2X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1003 NAG 3 n C NAG 2 C 2 NAG A 1004 NAG 3 n D NAG 1 D 1 NAG B 1001 NAG 3 n D NAG 2 D 2 NAG B 1002 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 103 1_555 A SG CYS 108 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 75 B CYS 108 1_555 B SG CYS 102 B CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 204 B CYS 237 1_555 B SG CYS 233 B CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 520 B CYS 553 1_555 B SG CYS 615 B CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 302 A ASN 323 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 344 A ASN 365 1_555 F C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 376 A ASN 397 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B ND2 ASN 371 B ASN 404 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 D O3 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 A O GLY 256 A GLY 277 1_555 I MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? # _chem_comp.formula 'C18 H22 Cl2 N O3 P' _chem_comp.formula_weight 402.252 _chem_comp.id SGG _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{S})-3-[[(1~{S})-1-(3,4-dichlorophenyl)ethyl]amino]-2-oxidanyl-propyl]-(phenylmethyl)phosphinic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O06 P03 SGG doub 448 n n C22 C21 SGG doub 449 n y C22 C23 SGG sing 450 n y C21 C20 SGG sing 451 n y C23 C24 SGG doub 452 n y C18 P03 SGG sing 453 n n C18 C17 SGG sing 454 n n P03 O08 SGG sing 455 n n P03 C19 SGG sing 456 n n O10 C17 SGG sing 457 n n C20 C19 SGG sing 458 n n C20 C25 SGG doub 459 n y C24 C25 SGG sing 460 n y C17 C16 SGG sing 461 n n C16 N05 SGG sing 462 n n CL2 C04 SGG sing 463 n n N05 C14 SGG sing 464 n n CL1 C13 SGG sing 465 n n C04 C13 SGG doub 466 n y C04 C07 SGG sing 467 n y C13 C12 SGG sing 468 n y C07 C09 SGG doub 469 n y C12 C11 SGG doub 470 n y C09 C11 SGG sing 471 n y C09 C14 SGG sing 472 n n C14 C15 SGG sing 473 n n C15 H1 SGG sing 474 n n C15 H2 SGG sing 475 n n C15 H3 SGG sing 476 n n C17 H4 SGG sing 477 n n C21 H5 SGG sing 478 n n C22 H6 SGG sing 479 n n C24 H7 SGG sing 480 n n C07 H8 SGG sing 481 n n C11 H9 SGG sing 482 n n C12 H10 SGG sing 483 n n C14 H11 SGG sing 484 n n C16 H12 SGG sing 485 n n C16 H13 SGG sing 486 n n C18 H14 SGG sing 487 n n C18 H15 SGG sing 488 n n C19 H16 SGG sing 489 n n C19 H17 SGG sing 490 n n C23 H18 SGG sing 491 n n C25 H19 SGG sing 492 n n N05 H20 SGG sing 493 n n O08 H22 SGG sing 494 n n O10 H23 SGG sing 495 n n # _atom_sites.entry_id 6W2X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 901 801 NAG NAG . F 4 NAG A 1 902 1002 NAG NAG . G 5 L9Q A 1 905 801 L9Q L9Q . H 6 SGG A 1 906 900 SGG LIG . I 7 MG A 1 907 1 MG MG . J 5 L9Q B 1 1003 801 L9Q L9Q . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 SGG . . . H 6 204.083 146.299 107.262 1 4.94 ? C13 SGG 906 A 1 HETATM 2 C C15 SGG . . . H 6 204.902 141.692 109.007 1 4.94 ? C15 SGG 906 A 1 HETATM 3 C C17 SGG . . . H 6 201.967 141.203 105.283 1 4.94 ? C17 SGG 906 A 1 HETATM 4 C C20 SGG . . . H 6 199.024 144.409 105.02 1 4.94 ? C20 SGG 906 A 1 HETATM 5 C C21 SGG . . . H 6 198.438 144.883 103.86 1 4.94 ? C21 SGG 906 A 1 HETATM 6 C C22 SGG . . . H 6 198.816 146.111 103.347 1 4.94 ? C22 SGG 906 A 1 HETATM 7 C C24 SGG . . . H 6 200.364 146.392 105.155 1 4.94 ? C24 SGG 906 A 1 HETATM 8 C C04 SGG . . . H 6 205.192 145.478 107.158 1 4.94 ? C04 SGG 906 A 1 HETATM 9 C C07 SGG . . . H 6 205.08 144.127 107.43 1 4.94 ? C07 SGG 906 A 1 HETATM 10 C C09 SGG . . . H 6 203.859 143.595 107.803 1 4.94 ? C09 SGG 906 A 1 HETATM 11 C C11 SGG . . . H 6 202.749 144.416 107.911 1 4.94 ? C11 SGG 906 A 1 HETATM 12 C C12 SGG . . . H 6 202.861 145.768 107.638 1 4.94 ? C12 SGG 906 A 1 HETATM 13 C C14 SGG . . . H 6 203.744 142.104 108.102 1 4.94 ? C14 SGG 906 A 1 HETATM 14 C C16 SGG . . . H 6 203.128 142.045 105.802 1 4.94 ? C16 SGG 906 A 1 HETATM 15 C C18 SGG . . . H 6 201.156 142.022 104.285 1 4.94 ? C18 SGG 906 A 1 HETATM 16 C C19 SGG . . . H 6 198.608 143.056 105.586 1 4.94 ? C19 SGG 906 A 1 HETATM 17 C C23 SGG . . . H 6 199.779 146.865 103.994 1 4.94 ? C23 SGG 906 A 1 HETATM 18 C C25 SGG . . . H 6 199.985 145.164 105.668 1 4.94 ? C25 SGG 906 A 1 HETATM 19 N N05 SGG . . . H 6 203.806 141.336 106.871 1 4.94 ? N05 SGG 906 A 1 HETATM 20 O O06 SGG . . . H 6 198.645 141.647 103.222 1 4.94 ? O06 SGG 906 A 1 HETATM 21 O O08 SGG . . . H 6 199.177 140.382 105.263 1 4.94 ? O08 SGG 906 A 1 HETATM 22 O O10 SGG . . . H 6 202.467 140.064 104.647 1 4.94 ? O10 SGG 906 A 1 HETATM 23 P P03 SGG . . . H 6 199.347 141.7 104.553 1 4.94 ? P03 SGG 906 A 1 HETATM 24 CL CL1 SGG . . . H 6 204.233 148.042 106.91 1 4.94 ? CL1 SGG 906 A 1 HETATM 25 CL CL2 SGG . . . H 6 206.767 146.163 106.673 1 4.94 ? CL2 SGG 906 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #