data_6W2Y # _model_server_result.job_id ei4Y_UfGXCnyrSSSM4DPGg _model_server_result.datetime_utc '2025-03-09 02:11:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":902}' # _entry.id 6W2Y # _exptl.entry_id 6W2Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6W2Y _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W2Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 J N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1003 NAG 2 n C NAG 2 C 2 NAG A 1004 NAG 2 n D NAG 1 D 1 NAG B 953 NAG 2 n D NAG 2 D 2 NAG B 954 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 103 1_555 A SG CYS 108 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 238 A CYS 259 1_555 A SG CYS 272 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 525 A CYS 546 1_555 A SG CYS 623 A CYS 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 82 B CYS 103 1_555 B SG CYS 108 B CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 B SG CYS 238 B CYS 259 1_555 B SG CYS 272 B CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 525 B CYS 546 1_555 B SG CYS 623 B CYS 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 302 A ASN 323 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 344 A ASN 365 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale3 B ND2 ASN 302 B ASN 323 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 B ND2 ASN 376 B ASN 397 1_555 J C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A O GLY 256 A GLY 277 1_555 G MG MG . A MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 A OE1 GLU 288 A GLU 309 1_555 G MG MG . A MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc3 A OE1 GLU 402 A GLU 423 1_555 G MG MG . A MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc4 B O GLY 256 B GLY 277 1_555 L MG MG . B MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc5 B OE1 GLU 288 B GLU 309 1_555 L MG MG . B MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc6 B OE1 GLU 402 B GLU 423 1_555 L MG MG . B MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 365 n n C1 O1 NAG sing 366 n n C1 O5 NAG sing 367 n n C1 H1 NAG sing 368 n n C2 C3 NAG sing 369 n n C2 N2 NAG sing 370 n n C2 H2 NAG sing 371 n n C3 C4 NAG sing 372 n n C3 O3 NAG sing 373 n n C3 H3 NAG sing 374 n n C4 C5 NAG sing 375 n n C4 O4 NAG sing 376 n n C4 H4 NAG sing 377 n n C5 C6 NAG sing 378 n n C5 O5 NAG sing 379 n n C5 H5 NAG sing 380 n n C6 O6 NAG sing 381 n n C6 H61 NAG sing 382 n n C6 H62 NAG sing 383 n n C7 C8 NAG sing 384 n n C7 N2 NAG sing 385 n n C7 O7 NAG doub 386 n n C8 H81 NAG sing 387 n n C8 H82 NAG sing 388 n n C8 H83 NAG sing 389 n n N2 HN2 NAG sing 390 n n O1 HO1 NAG sing 391 n n O3 HO3 NAG sing 392 n n O4 HO4 NAG sing 393 n n O6 HO6 NAG sing 394 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6W2Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 901 901 NAG NAG . F 3 NAG A 1 904 1801 NAG NAG . G 4 MG A 1 905 1 MG MG . H 5 L9Q A 1 906 801 L9Q L9Q . I 6 SGG A 1 907 900 SGG LIG . J 3 NAG B 1 901 1751 NAG NAG . K 3 NAG B 1 902 952 NAG NAG . L 4 MG B 1 905 2 MG MG . M 5 L9Q B 1 906 802 L9Q L9Q . N 6 SGG B 1 907 901 SGG LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 3 134.999 181.601 87.216 1 66.49 ? C1 NAG 902 B 1 HETATM 2 C C2 NAG . . . K 3 134.319 181.795 88.567 1 66.49 ? C2 NAG 902 B 1 HETATM 3 C C3 NAG . . . K 3 133.009 182.555 88.393 1 66.49 ? C3 NAG 902 B 1 HETATM 4 C C4 NAG . . . K 3 133.252 183.858 87.644 1 66.49 ? C4 NAG 902 B 1 HETATM 5 C C5 NAG . . . K 3 133.98 183.579 86.333 1 66.49 ? C5 NAG 902 B 1 HETATM 6 C C6 NAG . . . K 3 134.372 184.839 85.599 1 66.49 ? C6 NAG 902 B 1 HETATM 7 C C7 NAG . . . K 3 134.521 180.248 90.462 1 66.49 ? C7 NAG 902 B 1 HETATM 8 C C8 NAG . . . K 3 134.194 178.884 90.988 1 66.49 ? C8 NAG 902 B 1 HETATM 9 N N2 NAG . . . K 3 134.088 180.519 89.226 1 66.49 ? N2 NAG 902 B 1 HETATM 10 O O3 NAG . . . K 3 132.442 182.825 89.67 1 66.49 ? O3 NAG 902 B 1 HETATM 11 O O4 NAG . . . K 3 132.011 184.494 87.361 1 66.49 ? O4 NAG 902 B 1 HETATM 12 O O5 NAG . . . K 3 135.196 182.865 86.592 1 66.49 ? O5 NAG 902 B 1 HETATM 13 O O6 NAG . . . K 3 135.542 185.415 86.164 1 66.49 ? O6 NAG 902 B 1 HETATM 14 O O7 NAG . . . K 3 135.146 181.069 91.126 1 66.49 ? O7 NAG 902 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #