data_6W33 # _model_server_result.job_id phHLg-srbhm1ZolGHBXErg _model_server_result.datetime_utc '2024-11-10 01:30:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6W33 # _exptl.entry_id 6W33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 85.081 _cell.angle_beta 88.25 _cell.angle_gamma 86.677 _cell.entry_id 6W33 _cell.length_a 42.728 _cell.length_b 43.643 _cell.length_c 72.404 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,M 1 1 B,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 66 A ALA 94 1_555 A N 1X6 67 A 1X6 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C 1X6 67 A 1X6 95 1_555 A N THR 68 A THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C ALA 66 B ALA 94 1_555 B N 1X6 67 B 1X6 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C 1X6 67 B 1X6 95 1_555 B N THR 68 B THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 6W33 _atom_sites.fract_transf_matrix[1][1] 0.023404 _atom_sites.fract_transf_matrix[1][2] -0.001359 _atom_sites.fract_transf_matrix[1][3] -0.000603 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022952 _atom_sites.fract_transf_matrix[2][3] -0.001938 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 401 355 CL CL . D 3 SO4 A 1 402 356 SO4 SO4 . E 4 EDO A 1 403 357 EDO EDO . F 5 GOL A 1 404 358 GOL GOL . G 6 MES A 1 405 351 MES MES . H 4 EDO A 1 406 352 EDO EDO . I 4 EDO A 1 407 353 EDO EDO . J 5 GOL A 1 408 354 GOL GOL . K 4 EDO A 1 409 358 EDO EDO . L 6 MES B 1 401 351 MES MES . M 7 HOH A 1 501 216 HOH HOH . M 7 HOH A 2 502 222 HOH HOH . M 7 HOH A 3 503 97 HOH HOH . M 7 HOH A 4 504 134 HOH HOH . M 7 HOH A 5 505 203 HOH HOH . M 7 HOH A 6 506 132 HOH HOH . M 7 HOH A 7 507 24 HOH HOH . M 7 HOH A 8 508 147 HOH HOH . M 7 HOH A 9 509 166 HOH HOH . M 7 HOH A 10 510 62 HOH HOH . M 7 HOH A 11 511 29 HOH HOH . M 7 HOH A 12 512 151 HOH HOH . M 7 HOH A 13 513 146 HOH HOH . M 7 HOH A 14 514 219 HOH HOH . M 7 HOH A 15 515 73 HOH HOH . M 7 HOH A 16 516 72 HOH HOH . M 7 HOH A 17 517 223 HOH HOH . M 7 HOH A 18 518 51 HOH HOH . M 7 HOH A 19 519 95 HOH HOH . M 7 HOH A 20 520 136 HOH HOH . M 7 HOH A 21 521 195 HOH HOH . M 7 HOH A 22 522 78 HOH HOH . M 7 HOH A 23 523 55 HOH HOH . M 7 HOH A 24 524 10 HOH HOH . M 7 HOH A 25 525 184 HOH HOH . M 7 HOH A 26 526 88 HOH HOH . M 7 HOH A 27 527 82 HOH HOH . M 7 HOH A 28 528 8 HOH HOH . M 7 HOH A 29 529 139 HOH HOH . M 7 HOH A 30 530 181 HOH HOH . M 7 HOH A 31 531 156 HOH HOH . M 7 HOH A 32 532 234 HOH HOH . M 7 HOH A 33 533 41 HOH HOH . M 7 HOH A 34 534 186 HOH HOH . M 7 HOH A 35 535 153 HOH HOH . M 7 HOH A 36 536 233 HOH HOH . M 7 HOH A 37 537 39 HOH HOH . M 7 HOH A 38 538 33 HOH HOH . M 7 HOH A 39 539 154 HOH HOH . M 7 HOH A 40 540 1 HOH HOH . M 7 HOH A 41 541 47 HOH HOH . M 7 HOH A 42 542 63 HOH HOH . M 7 HOH A 43 543 221 HOH HOH . M 7 HOH A 44 544 27 HOH HOH . M 7 HOH A 45 545 28 HOH HOH . M 7 HOH A 46 546 133 HOH HOH . M 7 HOH A 47 547 30 HOH HOH . M 7 HOH A 48 548 22 HOH HOH . M 7 HOH A 49 549 210 HOH HOH . M 7 HOH A 50 550 129 HOH HOH . M 7 HOH A 51 551 45 HOH HOH . M 7 HOH A 52 552 56 HOH HOH . M 7 HOH A 53 553 50 HOH HOH . M 7 HOH A 54 554 94 HOH HOH . M 7 HOH A 55 555 34 HOH HOH . M 7 HOH A 56 556 42 HOH HOH . M 7 HOH A 57 557 85 HOH HOH . M 7 HOH A 58 558 12 HOH HOH . M 7 HOH A 59 559 217 HOH HOH . M 7 HOH A 60 560 13 HOH HOH . M 7 HOH A 61 561 128 HOH HOH . M 7 HOH A 62 562 180 HOH HOH . M 7 HOH A 63 563 148 HOH HOH . M 7 HOH A 64 564 127 HOH HOH . M 7 HOH A 65 565 66 HOH HOH . M 7 HOH A 66 566 49 HOH HOH . M 7 HOH A 67 567 36 HOH HOH . M 7 HOH A 68 568 111 HOH HOH . M 7 HOH A 69 569 204 HOH HOH . M 7 HOH A 70 570 176 HOH HOH . M 7 HOH A 71 571 80 HOH HOH . M 7 HOH A 72 572 179 HOH HOH . M 7 HOH A 73 573 212 HOH HOH . M 7 HOH A 74 574 53 HOH HOH . M 7 HOH A 75 575 226 HOH HOH . M 7 HOH A 76 576 21 HOH HOH . M 7 HOH A 77 577 9 HOH HOH . M 7 HOH A 78 578 169 HOH HOH . M 7 HOH A 79 579 11 HOH HOH . M 7 HOH A 80 580 161 HOH HOH . M 7 HOH A 81 581 31 HOH HOH . M 7 HOH A 82 582 79 HOH HOH . M 7 HOH A 83 583 104 HOH HOH . M 7 HOH A 84 584 192 HOH HOH . M 7 HOH A 85 585 175 HOH HOH . M 7 HOH A 86 586 182 HOH HOH . M 7 HOH A 87 587 231 HOH HOH . M 7 HOH A 88 588 32 HOH HOH . M 7 HOH A 89 589 183 HOH HOH . M 7 HOH A 90 590 23 HOH HOH . M 7 HOH A 91 591 165 HOH HOH . M 7 HOH A 92 592 168 HOH HOH . M 7 HOH A 93 593 81 HOH HOH . M 7 HOH A 94 594 137 HOH HOH . M 7 HOH A 95 595 149 HOH HOH . M 7 HOH A 96 596 60 HOH HOH . M 7 HOH A 97 597 140 HOH HOH . M 7 HOH A 98 598 189 HOH HOH . M 7 HOH A 99 599 48 HOH HOH . M 7 HOH A 100 600 6 HOH HOH . M 7 HOH A 101 601 25 HOH HOH . M 7 HOH A 102 602 77 HOH HOH . M 7 HOH A 103 603 16 HOH HOH . M 7 HOH A 104 604 167 HOH HOH . M 7 HOH A 105 605 141 HOH HOH . M 7 HOH A 106 606 54 HOH HOH . M 7 HOH A 107 607 159 HOH HOH . M 7 HOH A 108 608 113 HOH HOH . M 7 HOH A 109 609 155 HOH HOH . M 7 HOH A 110 610 86 HOH HOH . M 7 HOH A 111 611 84 HOH HOH . M 7 HOH A 112 612 188 HOH HOH . M 7 HOH A 113 613 237 HOH HOH . M 7 HOH A 114 614 152 HOH HOH . M 7 HOH A 115 615 14 HOH HOH . M 7 HOH A 116 616 71 HOH HOH . M 7 HOH A 117 617 163 HOH HOH . M 7 HOH A 118 618 59 HOH HOH . M 7 HOH A 119 619 232 HOH HOH . M 7 HOH A 120 620 220 HOH HOH . M 7 HOH A 121 621 122 HOH HOH . M 7 HOH A 122 622 230 HOH HOH . M 7 HOH A 123 623 135 HOH HOH . M 7 HOH A 124 624 218 HOH HOH . M 7 HOH A 125 625 236 HOH HOH . M 7 HOH A 126 626 19 HOH HOH . M 7 HOH A 127 627 101 HOH HOH . M 7 HOH A 128 628 143 HOH HOH . M 7 HOH A 129 629 197 HOH HOH . M 7 HOH A 130 630 142 HOH HOH . M 7 HOH A 131 631 26 HOH HOH . M 7 HOH A 132 632 211 HOH HOH . M 7 HOH A 133 633 75 HOH HOH . M 7 HOH A 134 634 57 HOH HOH . M 7 HOH A 135 635 177 HOH HOH . M 7 HOH A 136 636 38 HOH HOH . M 7 HOH A 137 637 174 HOH HOH . M 7 HOH A 138 638 120 HOH HOH . M 7 HOH A 139 639 187 HOH HOH . M 7 HOH A 140 640 235 HOH HOH . M 7 HOH A 141 641 35 HOH HOH . M 7 HOH A 142 642 144 HOH HOH . M 7 HOH A 143 643 198 HOH HOH . M 7 HOH A 144 644 138 HOH HOH . M 7 HOH A 145 645 116 HOH HOH . M 7 HOH A 146 646 74 HOH HOH . N 7 HOH B 1 501 205 HOH HOH . N 7 HOH B 2 502 207 HOH HOH . N 7 HOH B 3 503 130 HOH HOH . N 7 HOH B 4 504 213 HOH HOH . N 7 HOH B 5 505 109 HOH HOH . N 7 HOH B 6 506 100 HOH HOH . N 7 HOH B 7 507 131 HOH HOH . N 7 HOH B 8 508 201 HOH HOH . N 7 HOH B 9 509 46 HOH HOH . N 7 HOH B 10 510 126 HOH HOH . N 7 HOH B 11 511 121 HOH HOH . N 7 HOH B 12 512 172 HOH HOH . N 7 HOH B 13 513 123 HOH HOH . N 7 HOH B 14 514 185 HOH HOH . N 7 HOH B 15 515 15 HOH HOH . N 7 HOH B 16 516 162 HOH HOH . N 7 HOH B 17 517 190 HOH HOH . N 7 HOH B 18 518 124 HOH HOH . N 7 HOH B 19 519 40 HOH HOH . N 7 HOH B 20 520 194 HOH HOH . N 7 HOH B 21 521 225 HOH HOH . N 7 HOH B 22 522 214 HOH HOH . N 7 HOH B 23 523 118 HOH HOH . N 7 HOH B 24 524 37 HOH HOH . N 7 HOH B 25 525 103 HOH HOH . N 7 HOH B 26 526 61 HOH HOH . N 7 HOH B 27 527 89 HOH HOH . N 7 HOH B 28 528 227 HOH HOH . N 7 HOH B 29 529 164 HOH HOH . N 7 HOH B 30 530 157 HOH HOH . N 7 HOH B 31 531 145 HOH HOH . N 7 HOH B 32 532 206 HOH HOH . N 7 HOH B 33 533 171 HOH HOH . N 7 HOH B 34 534 160 HOH HOH . N 7 HOH B 35 535 193 HOH HOH . N 7 HOH B 36 536 106 HOH HOH . N 7 HOH B 37 537 125 HOH HOH . N 7 HOH B 38 538 228 HOH HOH . N 7 HOH B 39 539 117 HOH HOH . N 7 HOH B 40 540 238 HOH HOH . N 7 HOH B 41 541 173 HOH HOH . N 7 HOH B 42 542 209 HOH HOH . N 7 HOH B 43 543 208 HOH HOH . N 7 HOH B 44 544 229 HOH HOH . N 7 HOH B 45 545 158 HOH HOH . N 7 HOH B 46 546 224 HOH HOH . N 7 HOH B 47 547 199 HOH HOH . N 7 HOH B 48 548 52 HOH HOH . N 7 HOH B 49 549 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 21.736 12.487 -4.338 1 60.57 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . F 5 21.884 11.105 -4.096 1 60.26 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . F 5 20.235 12.766 -4.589 1 61.87 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . F 5 19.428 12.288 -3.552 1 62.3 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . F 5 20.134 14.314 -4.738 1 62.37 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . F 5 20.512 14.639 -6.046 1 57.68 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #