data_6W3E # _model_server_result.job_id mPYY6vu6BRvJl8tvrciPIg _model_server_result.datetime_utc '2025-03-04 07:44:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6w3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 6W3E # _exptl.entry_id 6W3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 484.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.9 _cell.angle_gamma 90 _cell.entry_id 6W3E _cell.length_a 61.67 _cell.length_b 139.24 _cell.length_c 63.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C HIS 177 B HIS 723 1_555 B N SEP 178 B SEP 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C SEP 178 B SEP 724 1_555 B N PHE 179 B PHE 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C PHE 179 B PHE 725 1_555 B N SEP 180 B SEP 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 B C SEP 180 B SEP 726 1_555 B N ARG 181 B ARG 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C27 H28 N6 O3' _chem_comp.formula_weight 484.55 _chem_comp.id SJV _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C25 SJV sing 306 n n C26 N27 SJV sing 307 n n C25 C24 SJV sing 308 n n N27 C28 SJV sing 309 n n C24 C22 SJV sing 310 n n C28 C22 SJV sing 311 n n C22 N21 SJV sing 312 n n C12 C11 SJV doub 313 n y C12 C13 SJV sing 314 n y N21 C19 SJV sing 315 n n C11 C10 SJV sing 316 n y C13 N14 SJV doub 317 n y N20 C19 SJV doub 318 n y N20 C15 SJV sing 319 n y C19 N18 SJV sing 320 n y C10 C15 SJV sing 321 n n C10 C9 SJV doub 322 n y N14 C9 SJV sing 323 n y C15 C16 SJV doub 324 n y C9 O8 SJV sing 325 n n N18 C17 SJV doub 326 n y C1 C2 SJV sing 327 n n C16 C17 SJV sing 328 n y O8 C7 SJV sing 329 n n C2 C7 SJV doub 330 n y C2 C3 SJV sing 331 n y C7 C6 SJV sing 332 n y C3 C4 SJV doub 333 n y C6 C29 SJV doub 334 n y C6 C5 SJV sing 335 n y C29 C30 SJV sing 336 n y C4 C5 SJV sing 337 n y C5 C32 SJV doub 338 n y C30 C31 SJV doub 339 n y C32 C31 SJV sing 340 n y C32 N33 SJV sing 341 n n N33 C34 SJV sing 342 n n O35 C34 SJV doub 343 n n C34 O36 SJV sing 344 n n O36 C37 SJV sing 345 n n C4 H1 SJV sing 346 n n C11 H2 SJV sing 347 n n C12 H3 SJV sing 348 n n C13 H4 SJV sing 349 n n C3 H5 SJV sing 350 n n C1 H6 SJV sing 351 n n C1 H7 SJV sing 352 n n C1 H8 SJV sing 353 n n C16 H9 SJV sing 354 n n C17 H10 SJV sing 355 n n N21 H11 SJV sing 356 n n C22 H23 SJV sing 357 n n C24 H12 SJV sing 358 n n C24 H13 SJV sing 359 n n C25 H14 SJV sing 360 n n C25 H15 SJV sing 361 n n C26 H16 SJV sing 362 n n C26 H17 SJV sing 363 n n N27 H18 SJV sing 364 n n C28 H20 SJV sing 365 n n C28 H21 SJV sing 366 n n C29 H22 SJV sing 367 n n C30 H24 SJV sing 368 n n C31 H25 SJV sing 369 n n N33 H26 SJV sing 370 n n C37 H27 SJV sing 371 n n C37 H28 SJV sing 372 n n C37 H29 SJV sing 373 n n # _atom_sites.entry_id 6W3E _atom_sites.fract_transf_matrix[1][1] 0.016215 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007527 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SJV A 1 1001 1001 SJV DRG . D 2 SJV B 1 1001 1001 SJV DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 SJV . . . C 2 17.927 -39.769 20.667 1 73.49 ? C4 SJV 1001 A 1 HETATM 2 C C5 SJV . . . C 2 17.202 -40.959 20.839 1 73.08 ? C5 SJV 1001 A 1 HETATM 3 C C6 SJV . . . C 2 16.195 -41.298 19.902 1 71.86 ? C6 SJV 1001 A 1 HETATM 4 C C11 SJV . . . C 2 14.573 -42.53 14.757 1 44.35 ? C11 SJV 1001 A 1 HETATM 5 C C7 SJV . . . C 2 15.942 -40.436 18.816 1 66.74 ? C7 SJV 1001 A 1 HETATM 6 C C9 SJV . . . C 2 15.256 -41.361 16.749 1 54.64 ? C9 SJV 1001 A 1 HETATM 7 C C10 SJV . . . C 2 14.226 -41.909 15.959 1 49.21 ? C10 SJV 1001 A 1 HETATM 8 C C12 SJV . . . C 2 15.906 -42.578 14.39 1 43.52 ? C12 SJV 1001 A 1 HETATM 9 C C13 SJV . . . C 2 16.857 -42.014 15.218 1 47.54 ? C13 SJV 1001 A 1 HETATM 10 C C3 SJV . . . C 2 17.655 -38.956 19.608 1 69.78 ? C3 SJV 1001 A 1 HETATM 11 C C1 SJV . . . C 2 16.392 -38.358 17.53 1 59.48 ? C1 SJV 1001 A 1 HETATM 12 C C2 SJV . . . C 2 16.664 -39.284 18.687 1 63.94 ? C2 SJV 1001 A 1 HETATM 13 O O8 SJV . . . C 2 14.967 -40.744 17.921 1 64.31 ? O8 SJV 1001 A 1 HETATM 14 N N14 SJV . . . C 2 16.514 -41.432 16.35 1 51.19 ? N14 SJV 1001 A 1 HETATM 15 C C15 SJV . . . C 2 12.793 -41.862 16.354 1 49.57 ? C15 SJV 1001 A 1 HETATM 16 C C16 SJV . . . C 2 12.395 -41.848 17.696 1 49.81 ? C16 SJV 1001 A 1 HETATM 17 C C17 SJV . . . C 2 11.046 -41.809 17.995 1 52.14 ? C17 SJV 1001 A 1 HETATM 18 N N18 SJV . . . C 2 10.167 -41.797 17.007 1 51.05 ? N18 SJV 1001 A 1 HETATM 19 C C19 SJV . . . C 2 10.564 -41.823 15.744 1 45.26 ? C19 SJV 1001 A 1 HETATM 20 N N20 SJV . . . C 2 11.847 -41.857 15.415 1 47.04 ? N20 SJV 1001 A 1 HETATM 21 N N21 SJV . . . C 2 9.604 -41.807 14.75 1 39.67 ? N21 SJV 1001 A 1 HETATM 22 C C22 SJV . . . C 2 9.947 -42.201 13.383 1 41.99 ? C22 SJV 1001 A 1 HETATM 23 C C24 SJV . . . C 2 8.656 -42.453 12.6 1 43.14 ? C24 SJV 1001 A 1 HETATM 24 C C25 SJV . . . C 2 9.004 -42.795 11.149 1 45.56 ? C25 SJV 1001 A 1 HETATM 25 C C26 SJV . . . C 2 9.831 -41.66 10.542 1 44.88 ? C26 SJV 1001 A 1 HETATM 26 N N27 SJV . . . C 2 11.056 -41.468 11.328 1 48.52 ? N27 SJV 1001 A 1 HETATM 27 C C28 SJV . . . C 2 10.743 -41.082 12.709 1 47.84 ? C28 SJV 1001 A 1 HETATM 28 C C29 SJV . . . C 2 15.466 -42.486 20.068 1 75.24 ? C29 SJV 1001 A 1 HETATM 29 C C30 SJV . . . C 2 15.732 -43.301 21.125 1 78.14 ? C30 SJV 1001 A 1 HETATM 30 C C31 SJV . . . C 2 16.717 -42.974 22.054 1 78.73 ? C31 SJV 1001 A 1 HETATM 31 C C32 SJV . . . C 2 17.464 -41.821 21.925 1 76.6 ? C32 SJV 1001 A 1 HETATM 32 N N33 SJV . . . C 2 18.453 -41.467 22.854 1 77.47 ? N33 SJV 1001 A 1 HETATM 33 C C34 SJV . . . C 2 19.245 -42.336 23.524 1 76.47 ? C34 SJV 1001 A 1 HETATM 34 O O35 SJV . . . C 2 19.172 -43.538 23.358 1 76.65 ? O35 SJV 1001 A 1 HETATM 35 O O36 SJV . . . C 2 20.15 -41.849 24.394 1 75.99 ? O36 SJV 1001 A 1 HETATM 36 C C37 SJV . . . C 2 20.794 -42.801 25.28 1 77.14 ? C37 SJV 1001 A 1 HETATM 37 H H23 SJV . . . C 2 10.548 -43.111 13.405 1 50.39 ? H23 SJV 1001 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #