data_6W3E
#
_model_server_result.job_id            VGPoIj5tVHGOsPmmMmyIWQ 
_model_server_result.datetime_utc      '2025-03-04 07:30:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6w3e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    6W3E 
#
_exptl.entry_id    6W3E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              484.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.9 
_cell.angle_gamma         90 
_cell.entry_id            6W3E 
_cell.length_a            61.67 
_cell.length_b            139.24 
_cell.length_c            63.95 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6W3E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C HIS 177 B HIS 723 1_555 B N SEP 178 B SEP 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 B C SEP 178 B SEP 724 1_555 B N PHE 179 B PHE 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 B C PHE 179 B PHE 725 1_555 B N SEP 180 B SEP 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 B C SEP 180 B SEP 726 1_555 B N ARG 181 B ARG 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C27 H28 N6 O3' 
_chem_comp.formula_weight    484.55 
_chem_comp.id                SJV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C26 C25 SJV sing 306 n n 
C26 N27 SJV sing 307 n n 
C25 C24 SJV sing 308 n n 
N27 C28 SJV sing 309 n n 
C24 C22 SJV sing 310 n n 
C28 C22 SJV sing 311 n n 
C22 N21 SJV sing 312 n n 
C12 C11 SJV doub 313 n y 
C12 C13 SJV sing 314 n y 
N21 C19 SJV sing 315 n n 
C11 C10 SJV sing 316 n y 
C13 N14 SJV doub 317 n y 
N20 C19 SJV doub 318 n y 
N20 C15 SJV sing 319 n y 
C19 N18 SJV sing 320 n y 
C10 C15 SJV sing 321 n n 
C10 C9 SJV doub 322 n y 
N14 C9 SJV sing 323 n y 
C15 C16 SJV doub 324 n y 
C9 O8 SJV sing 325 n n 
N18 C17 SJV doub 326 n y 
C1 C2 SJV sing 327 n n 
C16 C17 SJV sing 328 n y 
O8 C7 SJV sing 329 n n 
C2 C7 SJV doub 330 n y 
C2 C3 SJV sing 331 n y 
C7 C6 SJV sing 332 n y 
C3 C4 SJV doub 333 n y 
C6 C29 SJV doub 334 n y 
C6 C5 SJV sing 335 n y 
C29 C30 SJV sing 336 n y 
C4 C5 SJV sing 337 n y 
C5 C32 SJV doub 338 n y 
C30 C31 SJV doub 339 n y 
C32 C31 SJV sing 340 n y 
C32 N33 SJV sing 341 n n 
N33 C34 SJV sing 342 n n 
O35 C34 SJV doub 343 n n 
C34 O36 SJV sing 344 n n 
O36 C37 SJV sing 345 n n 
C4 H1 SJV sing 346 n n 
C11 H2 SJV sing 347 n n 
C12 H3 SJV sing 348 n n 
C13 H4 SJV sing 349 n n 
C3 H5 SJV sing 350 n n 
C1 H6 SJV sing 351 n n 
C1 H7 SJV sing 352 n n 
C1 H8 SJV sing 353 n n 
C16 H9 SJV sing 354 n n 
C17 H10 SJV sing 355 n n 
N21 H11 SJV sing 356 n n 
C22 H23 SJV sing 357 n n 
C24 H12 SJV sing 358 n n 
C24 H13 SJV sing 359 n n 
C25 H14 SJV sing 360 n n 
C25 H15 SJV sing 361 n n 
C26 H16 SJV sing 362 n n 
C26 H17 SJV sing 363 n n 
N27 H18 SJV sing 364 n n 
C28 H20 SJV sing 365 n n 
C28 H21 SJV sing 366 n n 
C29 H22 SJV sing 367 n n 
C30 H24 SJV sing 368 n n 
C31 H25 SJV sing 369 n n 
N33 H26 SJV sing 370 n n 
C37 H27 SJV sing 371 n n 
C37 H28 SJV sing 372 n n 
C37 H29 SJV sing 373 n n 
#
_atom_sites.entry_id                     6W3E 
_atom_sites.fract_transf_matrix[1][1]    0.016215 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007527 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007182 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01724 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SJV A 1 1001 1001 SJV DRG . 
D 2 SJV B 1 1001 1001 SJV DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 SJV . . . D 2 -3.383 -44.608 42.55 1 68.05 ? C4 SJV 1001 B 1 
HETATM 2 C C5 SJV . . . D 2 -2.073 -45.068 42.754 1 73.08 ? C5 SJV 1001 B 1 
HETATM 3 C C6 SJV . . . D 2 -1.216 -44.358 43.632 1 70.01 ? C6 SJV 1001 B 1 
HETATM 4 C C11 SJV . . . D 2 -0.386 -41.883 48.699 1 53.1 ? C11 SJV 1001 B 1 
HETATM 5 C C7 SJV . . . D 2 -1.694 -43.203 44.288 1 65.7 ? C7 SJV 1001 B 1 
HETATM 6 C C9 SJV . . . D 2 -1.029 -42.533 46.469 1 58.24 ? C9 SJV 1001 B 1 
HETATM 7 C C10 SJV . . . D 2 -0.163 -41.813 47.322 1 53.28 ? C10 SJV 1001 B 1 
HETATM 8 C C12 SJV . . . D 2 -1.441 -42.645 49.171 1 53.14 ? C12 SJV 1001 B 1 
HETATM 9 C C13 SJV . . . D 2 -2.246 -43.316 48.272 1 56.88 ? C13 SJV 1001 B 1 
HETATM 10 C C3 SJV . . . D 2 -3.813 -43.487 43.195 1 63.96 ? C3 SJV 1001 B 1 
HETATM 11 C C1 SJV . . . D 2 -3.496 -41.549 44.744 1 62.6 ? C1 SJV 1001 B 1 
HETATM 12 C C2 SJV . . . D 2 -2.975 -42.784 44.055 1 62.81 ? C2 SJV 1001 B 1 
HETATM 13 O O8 SJV . . . D 2 -0.872 -42.506 45.12 1 63.99 ? O8 SJV 1001 B 1 
HETATM 14 N N14 SJV . . . D 2 -2.023 -43.243 46.975 1 58.22 ? N14 SJV 1001 B 1 
HETATM 15 C C15 SJV . . . D 2 0.98 -40.99 46.836 1 48.9 ? C15 SJV 1001 B 1 
HETATM 16 C C16 SJV . . . D 2 1.522 -41.161 45.558 1 51.05 ? C16 SJV 1001 B 1 
HETATM 17 C C17 SJV . . . D 2 2.584 -40.371 45.165 1 53.47 ? C17 SJV 1001 B 1 
HETATM 18 N N18 SJV . . . D 2 3.07 -39.48 46.009 1 50.35 ? N18 SJV 1001 B 1 
HETATM 19 C C19 SJV . . . D 2 2.555 -39.338 47.219 1 48.11 ? C19 SJV 1001 B 1 
HETATM 20 N N20 SJV . . . D 2 1.53 -40.072 47.635 1 48.86 ? N20 SJV 1001 B 1 
HETATM 21 N N21 SJV . . . D 2 3.118 -38.378 48.042 1 48.04 ? N21 SJV 1001 B 1 
HETATM 22 C C22 SJV . . . D 2 3.061 -38.474 49.501 1 49.38 ? C22 SJV 1001 B 1 
HETATM 23 C C24 SJV . . . D 2 4.207 -37.64 50.082 1 44.6 ? C24 SJV 1001 B 1 
HETATM 24 C C25 SJV . . . D 2 4.112 -37.629 51.608 1 45.87 ? C25 SJV 1001 B 1 
HETATM 25 C C26 SJV . . . D 2 2.744 -37.087 52.022 1 47.78 ? C26 SJV 1001 B 1 
HETATM 26 N N27 SJV . . . D 2 1.695 -37.948 51.465 1 51.38 ? N27 SJV 1001 B 1 
HETATM 27 C C28 SJV . . . D 2 1.72 -37.931 49.998 1 51.99 ? C28 SJV 1001 B 1 
HETATM 28 C C29 SJV . . . D 2 0.094 -44.815 43.838 1 69.97 ? C29 SJV 1001 B 1 
HETATM 29 C C30 SJV . . . D 2 0.532 -45.933 43.197 1 73.32 ? C30 SJV 1001 B 1 
HETATM 30 C C31 SJV . . . D 2 -0.3 -46.635 42.33 1 78.18 ? C31 SJV 1001 B 1 
HETATM 31 C C32 SJV . . . D 2 -1.599 -46.228 42.101 1 82.78 ? C32 SJV 1001 B 1 
HETATM 32 N N33 SJV . . . D 2 -2.445 -46.922 41.222 1 93.92 ? N33 SJV 1001 B 1 
HETATM 33 C C34 SJV . . . D 2 -2.477 -48.269 41.094 1 101.7 ? C34 SJV 1001 B 1 
HETATM 34 O O35 SJV . . . D 2 -1.756 -48.991 41.752 1 104.41 ? O35 SJV 1001 B 1 
HETATM 35 O O36 SJV . . . D 2 -3.326 -48.829 40.212 1 104.78 ? O36 SJV 1001 B 1 
HETATM 36 C C37 SJV . . . D 2 -2.977 -48.709 38.807 1 108.13 ? C37 SJV 1001 B 1 
HETATM 37 H H23 SJV . . . D 2 3.171 -39.515 49.806 1 59.25 ? H23 SJV 1001 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           37 
#