data_6W3N
#
_model_server_result.job_id            D1rvYq1wz6FqTCBVOexg_A 
_model_server_result.datetime_utc      '2024-10-22 03:27:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6w3n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":401}' 
#
_entry.id    6W3N 
#
_exptl.entry_id    6W3N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.928 
_cell.angle_gamma         90 
_cell.entry_id            6W3N 
_cell.length_a            71.554 
_cell.length_b            65.074 
_cell.length_c            91.424 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6W3N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,E,F,H,I,K 1 1 
D,G,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OP2 DC 8 D DC 8 1_555 F CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
hydrog 'DT-DG MISPAIR' hydrog1 A O4 DT 1 C DT 1 1_555 C N1 DG 10 E DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DT-DA PAIR' hydrog2 A N3 DT 1 C DT 1 1_555 C N1 DA 11 E DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'REVERSED WATSON-CRICK' hydrog3 A N3 DC 2 C DC 2 1_555 C N2 DG 10 E DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'REVERSED WATSON-CRICK' hydrog4 A O2 DC 2 C DC 2 1_555 C N1 DG 10 E DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DC PAIR' hydrog5 A N2 DG 3 C DG 3 1_555 C O2 DC 9 E DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N1 DA 4 C DA 4 1_555 C N3 DT 8 E DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N6 DA 4 C DA 4 1_555 C O4 DT 8 E DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog8 A N3 DC 5 C DC 5 1_555 C N2 DG 7 E DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N1 DG 6 C DG 6 1_555 C N3 DC 6 E DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N2 DG 6 C DG 6 1_555 C O2 DC 6 E DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O6 DG 6 C DG 6 1_555 C N4 DC 6 E DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N1 DG 7 C DG 7 1_555 C N3 DC 5 E DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N2 DG 7 C DG 7 1_555 C O2 DC 5 E DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A O6 DG 7 C DG 7 1_555 C N4 DC 5 E DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N1 DA 8 C DA 8 1_555 C N3 DT 4 E DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N6 DA 8 C DA 8 1_555 C O4 DT 4 E DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N3 DT 9 C DT 9 1_555 C N1 DA 3 E DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O4 DT 9 C DT 9 1_555 C N6 DA 3 E DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N3 DC 10 C DC 10 1_555 C N1 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N4 DC 10 C DC 10 1_555 C O6 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A O2 DC 10 C DC 10 1_555 C N2 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog22 A N4 DC 11 C DC 11 1_555 C O6 DG 1 E DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog23 A O2 DC 11 C DC 11 1_555 C N2 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 B N1 DG 1 D DG 1 1_555 C N3 DC 21 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 B N2 DG 1 D DG 1 1_555 C O2 DC 21 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 B O6 DG 1 D DG 1 1_555 C N4 DC 21 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 B N3 DC 2 D DC 2 1_555 C N1 DG 20 E DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 B N4 DC 2 D DC 2 1_555 C O6 DG 20 E DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 B O2 DC 2 D DC 2 1_555 C N2 DG 20 E DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 B N3 DT 3 D DT 3 1_555 C N1 DA 19 E DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 B O4 DT 3 D DT 3 1_555 C N6 DA 19 E DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 B N1 DG 4 D DG 4 1_555 C N3 DC 18 E DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog33 B N2 DG 4 D DG 4 1_555 C O2 DC 18 E DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog34 B O6 DG 4 D DG 4 1_555 C N4 DC 18 E DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog35 B N1 DA 5 D DA 5 1_555 C N3 DT 17 E DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog36 B N6 DA 5 D DA 5 1_555 C O4 DT 17 E DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog37 B N3 DT 6 D DT 6 1_555 C N1 DA 16 E DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog38 B O4 DT 6 D DT 6 1_555 C N6 DA 16 E DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog39 B N1 DG 7 D DG 7 1_555 C N3 DC 15 E DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog40 B N2 DG 7 D DG 7 1_555 C O2 DC 15 E DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog41 B O6 DG 7 D DG 7 1_555 C N4 DC 15 E DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog42 B N3 DC 8 D DC 8 1_555 C N1 DG 14 E DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog43 B N4 DC 8 D DC 8 1_555 C O6 DG 14 E DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog44 B O2 DC 8 D DC 8 1_555 C N2 DG 14 E DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog45 B N1 DG 9 D DG 9 1_555 C N3 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog46 B N2 DG 9 D DG 9 1_555 C O2 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog47 B O6 DG 9 D DG 9 1_555 C N4 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 267 n n 
C1 C2 EDO sing 268 n n 
C1 H11 EDO sing 269 n n 
C1 H12 EDO sing 270 n n 
O1 HO1 EDO sing 271 n n 
C2 O2 EDO sing 272 n n 
C2 H21 EDO sing 273 n n 
C2 H22 EDO sing 274 n n 
O2 HO2 EDO sing 275 n n 
#
_atom_sites.entry_id                     6W3N 
_atom_sites.fract_transf_matrix[1][1]    0.013975 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005067 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015367 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011635 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 5 CA D 1 101 101 CA CA . 
G 6 EDO A 1 401 401 EDO EDO . 
H 7 HOH D 1 201 4 HOH HOH . 
I 7 HOH E 1 101 1 HOH HOH . 
J 7 HOH A 1 501 42 HOH HOH . 
J 7 HOH A 2 502 20 HOH HOH . 
J 7 HOH A 3 503 2 HOH HOH . 
J 7 HOH A 4 504 13 HOH HOH . 
J 7 HOH A 5 505 41 HOH HOH . 
J 7 HOH A 6 506 14 HOH HOH . 
J 7 HOH A 7 507 2 HOH HOH . 
J 7 HOH A 8 508 45 HOH HOH . 
J 7 HOH A 9 509 23 HOH HOH . 
J 7 HOH A 10 510 9 HOH HOH . 
J 7 HOH A 11 511 27 HOH HOH . 
J 7 HOH A 12 512 15 HOH HOH . 
J 7 HOH A 13 513 40 HOH HOH . 
J 7 HOH A 14 514 22 HOH HOH . 
J 7 HOH A 15 515 24 HOH HOH . 
J 7 HOH A 16 516 5 HOH HOH . 
K 7 HOH B 1 401 16 HOH HOH . 
K 7 HOH B 2 402 10 HOH HOH . 
K 7 HOH B 3 403 25 HOH HOH . 
K 7 HOH B 4 404 1 HOH HOH . 
K 7 HOH B 5 405 19 HOH HOH . 
K 7 HOH B 6 406 34 HOH HOH . 
K 7 HOH B 7 407 3 HOH HOH . 
K 7 HOH B 8 408 38 HOH HOH . 
K 7 HOH B 9 409 30 HOH HOH . 
K 7 HOH B 10 410 37 HOH HOH . 
K 7 HOH B 11 411 6 HOH HOH . 
K 7 HOH B 12 412 7 HOH HOH . 
K 7 HOH B 13 413 11 HOH HOH . 
K 7 HOH B 14 414 32 HOH HOH . 
K 7 HOH B 15 415 3 HOH HOH . 
K 7 HOH B 16 416 35 HOH HOH . 
K 7 HOH B 17 417 36 HOH HOH . 
K 7 HOH B 18 418 33 HOH HOH . 
K 7 HOH B 19 419 12 HOH HOH . 
K 7 HOH B 20 420 17 HOH HOH . 
K 7 HOH B 21 421 28 HOH HOH . 
K 7 HOH B 22 422 31 HOH HOH . 
K 7 HOH B 23 423 46 HOH HOH . 
K 7 HOH B 24 424 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 6 16.394 -8.699 170.3 1 55.52 ? C1 EDO 401 A 1 
HETATM 2 O O1 EDO . . . G 6 16.148 -7.88 169.159 1 50.29 ? O1 EDO 401 A 1 
HETATM 3 C C2 EDO . . . G 6 16.574 -10.14 169.856 1 52.87 ? C2 EDO 401 A 1 
HETATM 4 O O2 EDO . . . G 6 16.949 -10.937 170.981 1 66.13 ? O2 EDO 401 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#